Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS08040

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS08030 and PFLU_RS08035 are separated by 3 nucleotidesPFLU_RS08035 and PFLU_RS08040 overlap by 4 nucleotidesPFLU_RS08040 and PFLU_RS08045 overlap by 4 nucleotidesPFLU_RS08045 and PFLU_RS08050 overlap by 4 nucleotides PFLU_RS08030: PFLU_RS08030 - proline iminopeptidase-family hydrolase, at 1,790,185 to 1,791,072 _RS08030 PFLU_RS08035: PFLU_RS08035 - ABC transporter permease, at 1,791,076 to 1,792,023 _RS08035 PFLU_RS08040: PFLU_RS08040 - ABC transporter permease, at 1,792,020 to 1,792,877 _RS08040 PFLU_RS08045: PFLU_RS08045 - ABC transporter ATP-binding protein, at 1,792,874 to 1,793,830 _RS08045 PFLU_RS08050: PFLU_RS08050 - ABC transporter ATP-binding protein, at 1,793,827 to 1,794,798 _RS08050 Position (kb) 1792 1793Strain fitness (log2 ratio) -2 -1 0 1at 1791.028 kb on + strandat 1791.028 kb on + strandat 1791.029 kb on - strandat 1791.029 kb on - strandat 1791.029 kb on - strandat 1791.029 kb on - strandat 1791.154 kb on - strandat 1791.154 kb on - strandat 1791.154 kb on - strandat 1791.154 kb on - strandat 1791.280 kb on + strand, within PFLU_RS08035at 1791.280 kb on + strand, within PFLU_RS08035at 1791.281 kb on - strand, within PFLU_RS08035at 1791.281 kb on - strand, within PFLU_RS08035at 1791.281 kb on - strand, within PFLU_RS08035at 1791.334 kb on + strand, within PFLU_RS08035at 1791.334 kb on + strand, within PFLU_RS08035at 1791.334 kb on + strand, within PFLU_RS08035at 1791.334 kb on + strand, within PFLU_RS08035at 1791.334 kb on + strand, within PFLU_RS08035at 1791.334 kb on + strand, within PFLU_RS08035at 1791.335 kb on - strand, within PFLU_RS08035at 1791.386 kb on + strand, within PFLU_RS08035at 1791.387 kb on - strand, within PFLU_RS08035at 1791.913 kb on + strand, within PFLU_RS08035at 1791.913 kb on + strand, within PFLU_RS08035at 1791.913 kb on + strand, within PFLU_RS08035at 1791.913 kb on + strand, within PFLU_RS08035at 1791.913 kb on + strand, within PFLU_RS08035at 1791.913 kb on + strand, within PFLU_RS08035at 1791.913 kb on + strand, within PFLU_RS08035at 1791.913 kb on + strand, within PFLU_RS08035at 1791.913 kb on + strand, within PFLU_RS08035at 1791.914 kb on - strand, within PFLU_RS08035at 1791.914 kb on - strand, within PFLU_RS08035at 1791.914 kb on - strand, within PFLU_RS08035at 1791.914 kb on - strand, within PFLU_RS08035at 1791.914 kb on - strand, within PFLU_RS08035at 1791.914 kb on - strand, within PFLU_RS08035at 1791.914 kb on - strand, within PFLU_RS08035at 1791.914 kb on - strand, within PFLU_RS08035at 1792.139 kb on - strand, within PFLU_RS08040at 1792.139 kb on - strand, within PFLU_RS08040at 1792.139 kb on - strand, within PFLU_RS08040at 1792.161 kb on + strand, within PFLU_RS08040at 1792.161 kb on + strand, within PFLU_RS08040at 1792.162 kb on - strand, within PFLU_RS08040at 1792.162 kb on - strand, within PFLU_RS08040at 1792.162 kb on - strand, within PFLU_RS08040at 1792.232 kb on + strand, within PFLU_RS08040at 1792.236 kb on + strand, within PFLU_RS08040at 1792.236 kb on + strand, within PFLU_RS08040at 1792.236 kb on + strand, within PFLU_RS08040at 1792.236 kb on + strand, within PFLU_RS08040at 1792.236 kb on + strand, within PFLU_RS08040at 1792.236 kb on + strand, within PFLU_RS08040at 1792.236 kb on + strand, within PFLU_RS08040at 1792.236 kb on + strand, within PFLU_RS08040at 1792.236 kb on + strand, within PFLU_RS08040at 1792.236 kb on + strand, within PFLU_RS08040at 1792.236 kb on + strand, within PFLU_RS08040at 1792.237 kb on - strand, within PFLU_RS08040at 1792.237 kb on - strand, within PFLU_RS08040at 1792.237 kb on - strand, within PFLU_RS08040at 1792.237 kb on - strand, within PFLU_RS08040at 1792.237 kb on - strand, within PFLU_RS08040at 1792.237 kb on - strand, within PFLU_RS08040at 1792.354 kb on - strand, within PFLU_RS08040at 1792.473 kb on + strand, within PFLU_RS08040at 1792.473 kb on + strand, within PFLU_RS08040at 1792.473 kb on + strand, within PFLU_RS08040at 1792.473 kb on + strand, within PFLU_RS08040at 1792.473 kb on + strand, within PFLU_RS08040at 1792.473 kb on + strand, within PFLU_RS08040at 1792.474 kb on - strand, within PFLU_RS08040at 1792.474 kb on - strand, within PFLU_RS08040at 1792.474 kb on - strand, within PFLU_RS08040at 1792.474 kb on - strand, within PFLU_RS08040at 1792.474 kb on - strand, within PFLU_RS08040at 1792.506 kb on + strand, within PFLU_RS08040at 1792.506 kb on + strand, within PFLU_RS08040at 1792.507 kb on - strand, within PFLU_RS08040at 1792.507 kb on - strand, within PFLU_RS08040at 1792.612 kb on + strand, within PFLU_RS08040at 1792.612 kb on + strand, within PFLU_RS08040at 1792.612 kb on + strand, within PFLU_RS08040at 1792.613 kb on - strand, within PFLU_RS08040at 1792.613 kb on - strand, within PFLU_RS08040at 1792.619 kb on + strand, within PFLU_RS08040at 1792.695 kb on + strand, within PFLU_RS08040at 1792.695 kb on + strand, within PFLU_RS08040at 1792.696 kb on - strand, within PFLU_RS08040at 1792.696 kb on - strand, within PFLU_RS08040at 1793.032 kb on + strand, within PFLU_RS08045at 1793.032 kb on + strand, within PFLU_RS08045at 1793.032 kb on + strand, within PFLU_RS08045at 1793.033 kb on - strand, within PFLU_RS08045at 1793.033 kb on - strand, within PFLU_RS08045at 1793.079 kb on + strand, within PFLU_RS08045at 1793.079 kb on + strand, within PFLU_RS08045at 1793.079 kb on + strand, within PFLU_RS08045at 1793.080 kb on - strand, within PFLU_RS08045at 1793.080 kb on - strand, within PFLU_RS08045at 1793.080 kb on - strand, within PFLU_RS08045at 1793.080 kb on - strand, within PFLU_RS08045at 1793.080 kb on - strand, within PFLU_RS08045at 1793.324 kb on + strand, within PFLU_RS08045at 1793.325 kb on - strand, within PFLU_RS08045at 1793.558 kb on + strand, within PFLU_RS08045at 1793.558 kb on + strand, within PFLU_RS08045at 1793.558 kb on + strand, within PFLU_RS08045at 1793.558 kb on + strand, within PFLU_RS08045at 1793.558 kb on + strand, within PFLU_RS08045at 1793.558 kb on + strand, within PFLU_RS08045at 1793.558 kb on + strand, within PFLU_RS08045at 1793.559 kb on - strand, within PFLU_RS08045at 1793.559 kb on - strand, within PFLU_RS08045at 1793.559 kb on - strand, within PFLU_RS08045at 1793.559 kb on - strand, within PFLU_RS08045at 1793.559 kb on - strand, within PFLU_RS08045at 1793.559 kb on - strand, within PFLU_RS08045at 1793.559 kb on - strand, within PFLU_RS08045at 1793.559 kb on - strand, within PFLU_RS08045at 1793.559 kb on - strand, within PFLU_RS08045at 1793.591 kb on + strand, within PFLU_RS08045at 1793.591 kb on + strand, within PFLU_RS08045at 1793.591 kb on + strand, within PFLU_RS08045at 1793.591 kb on + strand, within PFLU_RS08045at 1793.591 kb on + strand, within PFLU_RS08045at 1793.591 kb on + strand, within PFLU_RS08045at 1793.592 kb on - strand, within PFLU_RS08045at 1793.592 kb on - strand, within PFLU_RS08045at 1793.592 kb on - strand, within PFLU_RS08045at 1793.621 kb on + strand, within PFLU_RS08045at 1793.621 kb on + strand, within PFLU_RS08045at 1793.622 kb on - strand, within PFLU_RS08045at 1793.622 kb on - strand, within PFLU_RS08045at 1793.768 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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1,791,028 + +0.3
1,791,028 + +1.1
1,791,029 - -1.8
1,791,029 - +0.4
1,791,029 - +0.3
1,791,029 - +0.4
1,791,154 - +0.1
1,791,154 - +0.3
1,791,154 - +0.2
1,791,154 - +0.5
1,791,280 + PFLU_RS08035 0.22 -1.3
1,791,280 + PFLU_RS08035 0.22 +0.2
1,791,281 - PFLU_RS08035 0.22 +0.9
1,791,281 - PFLU_RS08035 0.22 -0.2
1,791,281 - PFLU_RS08035 0.22 +0.2
1,791,334 + PFLU_RS08035 0.27 -0.2
1,791,334 + PFLU_RS08035 0.27 +0.4
1,791,334 + PFLU_RS08035 0.27 -0.3
1,791,334 + PFLU_RS08035 0.27 +1.6
1,791,334 + PFLU_RS08035 0.27 +0.7
1,791,334 + PFLU_RS08035 0.27 -0.4
1,791,335 - PFLU_RS08035 0.27 +0.1
1,791,386 + PFLU_RS08035 0.33 +0.3
1,791,387 - PFLU_RS08035 0.33 -0.2
1,791,913 + PFLU_RS08035 0.88 +0.5
1,791,913 + PFLU_RS08035 0.88 -0.8
1,791,913 + PFLU_RS08035 0.88 +0.0
1,791,913 + PFLU_RS08035 0.88 -0.2
1,791,913 + PFLU_RS08035 0.88 -0.6
1,791,913 + PFLU_RS08035 0.88 -0.7
1,791,913 + PFLU_RS08035 0.88 -0.7
1,791,913 + PFLU_RS08035 0.88 +0.4
1,791,913 + PFLU_RS08035 0.88 -0.3
1,791,914 - PFLU_RS08035 0.88 +0.5
1,791,914 - PFLU_RS08035 0.88 -0.0
1,791,914 - PFLU_RS08035 0.88 +0.8
1,791,914 - PFLU_RS08035 0.88 -1.4
1,791,914 - PFLU_RS08035 0.88 -0.2
1,791,914 - PFLU_RS08035 0.88 -0.2
1,791,914 - PFLU_RS08035 0.88 +0.4
1,791,914 - PFLU_RS08035 0.88 +0.5
1,792,139 - PFLU_RS08040 0.14 +0.8
1,792,139 - PFLU_RS08040 0.14 +0.1
1,792,139 - PFLU_RS08040 0.14 -0.3
1,792,161 + PFLU_RS08040 0.16 -0.6
1,792,161 + PFLU_RS08040 0.16 +0.0
1,792,162 - PFLU_RS08040 0.17 -0.3
1,792,162 - PFLU_RS08040 0.17 -0.2
1,792,162 - PFLU_RS08040 0.17 +0.4
1,792,232 + PFLU_RS08040 0.25 +0.2
1,792,236 + PFLU_RS08040 0.25 -0.2
1,792,236 + PFLU_RS08040 0.25 +0.3
1,792,236 + PFLU_RS08040 0.25 +0.2
1,792,236 + PFLU_RS08040 0.25 +0.5
1,792,236 + PFLU_RS08040 0.25 -1.1
1,792,236 + PFLU_RS08040 0.25 +1.0
1,792,236 + PFLU_RS08040 0.25 +0.3
1,792,236 + PFLU_RS08040 0.25 +0.5
1,792,236 + PFLU_RS08040 0.25 -0.5
1,792,236 + PFLU_RS08040 0.25 -0.5
1,792,236 + PFLU_RS08040 0.25 +0.4
1,792,237 - PFLU_RS08040 0.25 -0.3
1,792,237 - PFLU_RS08040 0.25 +1.1
1,792,237 - PFLU_RS08040 0.25 -0.5
1,792,237 - PFLU_RS08040 0.25 -0.2
1,792,237 - PFLU_RS08040 0.25 -0.4
1,792,237 - PFLU_RS08040 0.25 -1.3
1,792,354 - PFLU_RS08040 0.39 -0.5
1,792,473 + PFLU_RS08040 0.53 -0.1
1,792,473 + PFLU_RS08040 0.53 -0.5
1,792,473 + PFLU_RS08040 0.53 -0.2
1,792,473 + PFLU_RS08040 0.53 -0.8
1,792,473 + PFLU_RS08040 0.53 +1.0
1,792,473 + PFLU_RS08040 0.53 -0.6
1,792,474 - PFLU_RS08040 0.53 +0.1
1,792,474 - PFLU_RS08040 0.53 +0.4
1,792,474 - PFLU_RS08040 0.53 -0.0
1,792,474 - PFLU_RS08040 0.53 +0.1
1,792,474 - PFLU_RS08040 0.53 +0.6
1,792,506 + PFLU_RS08040 0.57 +0.4
1,792,506 + PFLU_RS08040 0.57 -0.3
1,792,507 - PFLU_RS08040 0.57 -1.0
1,792,507 - PFLU_RS08040 0.57 +0.5
1,792,612 + PFLU_RS08040 0.69 +0.5
1,792,612 + PFLU_RS08040 0.69 +0.3
1,792,612 + PFLU_RS08040 0.69 -0.4
1,792,613 - PFLU_RS08040 0.69 -1.1
1,792,613 - PFLU_RS08040 0.69 +0.2
1,792,619 + PFLU_RS08040 0.70 +0.6
1,792,695 + PFLU_RS08040 0.79 -1.0
1,792,695 + PFLU_RS08040 0.79 -0.6
1,792,696 - PFLU_RS08040 0.79 -0.9
1,792,696 - PFLU_RS08040 0.79 +0.6
1,793,032 + PFLU_RS08045 0.17 -0.4
1,793,032 + PFLU_RS08045 0.17 -0.4
1,793,032 + PFLU_RS08045 0.17 -0.1
1,793,033 - PFLU_RS08045 0.17 -0.1
1,793,033 - PFLU_RS08045 0.17 -0.6
1,793,079 + PFLU_RS08045 0.21 +0.7
1,793,079 + PFLU_RS08045 0.21 -0.2
1,793,079 + PFLU_RS08045 0.21 -0.1
1,793,080 - PFLU_RS08045 0.22 +0.2
1,793,080 - PFLU_RS08045 0.22 +1.0
1,793,080 - PFLU_RS08045 0.22 +0.5
1,793,080 - PFLU_RS08045 0.22 +0.7
1,793,080 - PFLU_RS08045 0.22 -0.6
1,793,324 + PFLU_RS08045 0.47 +0.0
1,793,325 - PFLU_RS08045 0.47 -0.1
1,793,558 + PFLU_RS08045 0.71 +0.0
1,793,558 + PFLU_RS08045 0.71 +1.2
1,793,558 + PFLU_RS08045 0.71 -0.3
1,793,558 + PFLU_RS08045 0.71 -0.2
1,793,558 + PFLU_RS08045 0.71 +0.1
1,793,558 + PFLU_RS08045 0.71 -0.2
1,793,558 + PFLU_RS08045 0.71 +0.7
1,793,559 - PFLU_RS08045 0.72 +0.3
1,793,559 - PFLU_RS08045 0.72 -0.8
1,793,559 - PFLU_RS08045 0.72 -0.9
1,793,559 - PFLU_RS08045 0.72 +0.7
1,793,559 - PFLU_RS08045 0.72 +0.4
1,793,559 - PFLU_RS08045 0.72 +0.7
1,793,559 - PFLU_RS08045 0.72 -0.0
1,793,559 - PFLU_RS08045 0.72 +0.7
1,793,559 - PFLU_RS08045 0.72 +1.0
1,793,591 + PFLU_RS08045 0.75 -0.2
1,793,591 + PFLU_RS08045 0.75 -0.5
1,793,591 + PFLU_RS08045 0.75 +0.2
1,793,591 + PFLU_RS08045 0.75 -1.0
1,793,591 + PFLU_RS08045 0.75 +0.3
1,793,591 + PFLU_RS08045 0.75 -1.0
1,793,592 - PFLU_RS08045 0.75 -0.8
1,793,592 - PFLU_RS08045 0.75 +0.4
1,793,592 - PFLU_RS08045 0.75 -0.5
1,793,621 + PFLU_RS08045 0.78 -1.8
1,793,621 + PFLU_RS08045 0.78 -0.1
1,793,622 - PFLU_RS08045 0.78 +0.9
1,793,622 - PFLU_RS08045 0.78 -0.9
1,793,768 - -0.3

Or see this region's nucleotide sequence