Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS04875

Experiment: NAG (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C)
1,087,910	+		PFLU_RS04870	0.18	+0.4
1,087,911	-		PFLU_RS04870	0.18	-1.3
1,088,021	+		PFLU_RS04870	0.27	-0.2
1,088,021	+		PFLU_RS04870	0.27	-0.4
1,088,022	-		PFLU_RS04870	0.27	-0.1
1,088,167	+		PFLU_RS04870	0.39	-0.3
1,088,168	-		PFLU_RS04870	0.40	+0.6
1,088,420	+		PFLU_RS04870	0.61	+0.9
1,088,471	+		PFLU_RS04870	0.65	-0.1
1,088,539	+		PFLU_RS04870	0.71	+0.4
1,088,540	-		PFLU_RS04870	0.71	-0.9
1,088,558	+		PFLU_RS04870	0.72	+0.2
1,088,559	-		PFLU_RS04870	0.73	-0.2
1,088,559	-		PFLU_RS04870	0.73	+0.7
1,088,559	-		PFLU_RS04870	0.73	+1.3
1,088,559	-		PFLU_RS04870	0.73	+0.2
1,088,673	-		PFLU_RS04870	0.82	+0.7
1,088,673	-		PFLU_RS04870	0.82	+1.0
1,088,730	-		PFLU_RS04870	0.87	+0.6
1,088,858	+				+0.6
1,088,858	+				+1.7
1,088,858	+				+0.1
1,088,858	+				+0.8
1,088,858	+				-0.2
1,088,858	+				-1.8
1,088,859	-				+0.4
1,088,859	-				+0.0
1,088,859	-				+0.1
1,088,859	-				+0.1
1,088,908	+				+0.1
1,088,908	+				+1.0
1,088,908	+				-1.2
1,088,989	+				-0.5
1,088,990	-				-0.1
1,089,013	+				-0.4
1,089,013	+				+0.4
1,089,145	+		PFLU_RS04875	0.16	+0.1
1,089,145	+		PFLU_RS04875	0.16	-1.3
1,089,145	+		PFLU_RS04875	0.16	+0.5
1,089,146	-		PFLU_RS04875	0.16	+0.3
1,089,146	-		PFLU_RS04875	0.16	+0.4
1,089,274	+		PFLU_RS04875	0.25	-2.8
1,089,274	+		PFLU_RS04875	0.25	+0.2
1,089,274	+		PFLU_RS04875	0.25	+0.2
1,089,274	+		PFLU_RS04875	0.25	+0.7
1,089,274	+		PFLU_RS04875	0.25	+0.7
1,089,275	-		PFLU_RS04875	0.25	+0.4
1,089,275	-		PFLU_RS04875	0.25	+0.4
1,089,275	-		PFLU_RS04875	0.25	-1.5
1,089,275	-		PFLU_RS04875	0.25	-0.5
1,089,278	+		PFLU_RS04875	0.25	-1.7
1,089,279	-		PFLU_RS04875	0.25	+0.6
1,089,279	-		PFLU_RS04875	0.25	+0.3
1,089,279	-		PFLU_RS04875	0.25	-0.7
1,089,279	-		PFLU_RS04875	0.25	-0.9
1,089,279	-		PFLU_RS04875	0.25	-0.3
1,089,279	-		PFLU_RS04875	0.25	-0.0
1,089,344	+		PFLU_RS04875	0.29	+0.1
1,089,345	-		PFLU_RS04875	0.29	+0.6
1,089,445	+		PFLU_RS04875	0.36	-0.3
1,089,445	+		PFLU_RS04875	0.36	+0.1
1,089,445	+		PFLU_RS04875	0.36	+0.3
1,089,445	+		PFLU_RS04875	0.36	+0.6
1,089,445	+		PFLU_RS04875	0.36	+0.5
1,089,445	+		PFLU_RS04875	0.36	+0.3
1,089,445	+		PFLU_RS04875	0.36	+0.3
1,089,446	-		PFLU_RS04875	0.36	+0.3
1,089,446	-		PFLU_RS04875	0.36	+0.7
1,089,446	-		PFLU_RS04875	0.36	+0.0
1,089,446	-		PFLU_RS04875	0.36	-1.5
1,089,446	-		PFLU_RS04875	0.36	+0.3
1,089,446	-		PFLU_RS04875	0.36	+0.1
1,089,446	-		PFLU_RS04875	0.36	-0.0
1,089,446	-		PFLU_RS04875	0.36	-0.2
1,089,446	-		PFLU_RS04875	0.36	-0.5
1,089,446	-		PFLU_RS04875	0.36	+0.5
1,089,446	-		PFLU_RS04875	0.36	+0.2
1,089,446	-		PFLU_RS04875	0.36	+0.7
1,089,446	-		PFLU_RS04875	0.36	+0.2
1,089,446	-		PFLU_RS04875	0.36	-0.8
1,089,506	-		PFLU_RS04875	0.40	+1.1
1,089,525	-		PFLU_RS04875	0.41	-0.1
1,089,547	+		PFLU_RS04875	0.43	+0.1
1,089,547	+		PFLU_RS04875	0.43	+0.6
1,089,547	+		PFLU_RS04875	0.43	+0.4
1,089,547	+		PFLU_RS04875	0.43	+1.9
1,089,547	+		PFLU_RS04875	0.43	-0.0
1,089,547	+		PFLU_RS04875	0.43	+0.3
1,089,547	+		PFLU_RS04875	0.43	-0.3
1,089,548	-		PFLU_RS04875	0.43	+0.9
1,089,548	-		PFLU_RS04875	0.43	+1.3
1,089,548	-		PFLU_RS04875	0.43	+0.3
1,089,548	-		PFLU_RS04875	0.43	+0.6
1,089,548	-		PFLU_RS04875	0.43	-1.0
1,089,548	-		PFLU_RS04875	0.43	-0.0
1,089,548	-		PFLU_RS04875	0.43	-0.3
1,089,554	-		PFLU_RS04875	0.43	-0.3
1,089,554	-		PFLU_RS04875	0.43	+2.1
1,089,622	+		PFLU_RS04875	0.47	+1.0
1,089,623	-		PFLU_RS04875	0.47	+1.3
1,089,692	-		PFLU_RS04875	0.52	-0.3
1,089,709	+		PFLU_RS04875	0.53	-0.7
1,089,724	+		PFLU_RS04875	0.54	+0.6
1,090,006	+		PFLU_RS04875	0.72	+0.8
1,090,021	+		PFLU_RS04875	0.73	-0.6
1,090,021	+		PFLU_RS04875	0.73	+0.4
1,090,021	+		PFLU_RS04875	0.73	+0.5
1,090,021	+		PFLU_RS04875	0.73	+0.6
1,090,021	+		PFLU_RS04875	0.73	+0.0
1,090,021	+		PFLU_RS04875	0.73	+0.3
1,090,022	-		PFLU_RS04875	0.74	-2.1
1,090,022	-		PFLU_RS04875	0.74	-0.2
1,090,022	-		PFLU_RS04875	0.74	+0.1
1,090,022	-		PFLU_RS04875	0.74	-3.6
1,090,022	-		PFLU_RS04875	0.74	-1.9
1,090,022	-		PFLU_RS04875	0.74	-0.4
1,090,022	-		PFLU_RS04875	0.74	-0.6
1,090,022	-		PFLU_RS04875	0.74	+0.9
1,090,022	-		PFLU_RS04875	0.74	-0.1
1,090,042	+		PFLU_RS04875	0.75	-0.6
1,090,043	-		PFLU_RS04875	0.75	-1.1
1,090,144	+		PFLU_RS04875	0.81	-0.2
1,090,144	+		PFLU_RS04875	0.81	-0.6
1,090,144	+		PFLU_RS04875	0.81	-0.1
1,090,252	+		PFLU_RS04875	0.89	-0.9
1,090,253	-		PFLU_RS04875	0.89	+0.7
1,090,253	-		PFLU_RS04875	0.89	-0.9
1,090,253	-		PFLU_RS04875	0.89	+0.2
1,090,309	+				+0.3
1,090,309	+				+0.4
1,090,310	-				+1.2
1,090,318	+				-0.4
1,090,318	+				+0.4
1,090,318	+				+0.2
1,090,318	+				-0.7
1,090,319	-				-0.1
1,090,319	-				+0.1
1,090,319	-				+1.0
1,090,319	-				+1.0
1,090,319	-				+0.7
1,090,366	+				-1.4
1,090,366	+				-0.7
1,090,366	+				-0.4
1,090,367	-				-1.1
1,090,367	-				-0.5
1,090,367	-				+0.7
1,090,369	+				+0.7
1,090,369	+				-0.2
1,090,370	-				+0.7
1,090,370	-				-0.2
1,090,446	-				-0.3
1,090,505	+				+0.3
1,090,508	+				+0.2
1,090,508	+				+0.7
1,090,508	+				-0.3
1,090,508	+				+0.4
1,090,508	+				-1.3
1,090,508	+				+0.5
1,090,508	+				+1.2
1,090,508	+				-0.6
1,090,508	+				+0.1
1,090,508	+				-1.3
1,090,508	+				+0.1
1,090,508	+				-0.1
1,090,508	+				-0.1
1,090,509	-				+0.5
1,090,509	-				-0.8
1,090,509	-				+0.3
1,090,509	-				-0.7
1,090,509	-				-1.1
1,090,509	-				+0.5
1,090,509	-				+0.5
1,090,509	-				-1.2
1,090,707	+		PFLU_RS04880	0.11	-0.1
1,090,707	+		PFLU_RS04880	0.11	+0.1
1,090,707	+		PFLU_RS04880	0.11	-0.6
1,090,707	+		PFLU_RS04880	0.11	+0.6
1,090,708	-		PFLU_RS04880	0.11	-0.6
1,090,737	+		PFLU_RS04880	0.14	+0.1
1,090,737	+		PFLU_RS04880	0.14	+0.3
1,090,738	-		PFLU_RS04880	0.14	-0.5
1,090,926	+		PFLU_RS04880	0.31	+0.4
1,090,926	+		PFLU_RS04880	0.31	+0.3
1,090,927	-		PFLU_RS04880	0.31	-0.5
1,091,013	+		PFLU_RS04880	0.39	-0.7
1,091,013	+		PFLU_RS04880	0.39	+0.7
1,091,013	+		PFLU_RS04880	0.39	-1.4
1,091,238	+		PFLU_RS04880	0.59	+0.8
1,091,238	+		PFLU_RS04880	0.59	+1.0
1,091,238	+		PFLU_RS04880	0.59	+0.4
1,091,239	-		PFLU_RS04880	0.59	+0.1
1,091,335	+		PFLU_RS04880	0.68	-0.2
1,091,336	-		PFLU_RS04880	0.68	+0.8
1,091,336	-		PFLU_RS04880	0.68	+0.2
1,091,336	-		PFLU_RS04880	0.68	-2.6
1,091,336	-		PFLU_RS04880	0.68	+0.3