Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS03770

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS31400 and PFLU_RS03765 overlap by 21 nucleotidesPFLU_RS03765 and PFLU_RS03770 are separated by 9 nucleotidesPFLU_RS03770 and PFLU_RS03775 are separated by 174 nucleotides PFLU_RS31400: PFLU_RS31400 - hypothetical protein, at 859,649 to 859,831 _RS31400 PFLU_RS03765: PFLU_RS03765 - sulfate adenylyltransferase subunit CysD, at 859,811 to 860,728 _RS03765 PFLU_RS03770: PFLU_RS03770 - sulfate adenylyltransferase subunit CysN, at 860,738 to 862,636 _RS03770 PFLU_RS03775: PFLU_RS03775 - acyltransferase, at 862,811 to 863,710 _RS03775 Position (kb) 860 861 862 863Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 859.748 kb on + strand, within PFLU_RS31400at 859.748 kb on + strand, within PFLU_RS31400at 859.748 kb on + strand, within PFLU_RS31400at 859.748 kb on + strand, within PFLU_RS31400at 859.748 kb on + strand, within PFLU_RS31400at 859.749 kb on - strand, within PFLU_RS31400at 859.749 kb on - strand, within PFLU_RS31400at 859.749 kb on - strand, within PFLU_RS31400at 859.749 kb on - strand, within PFLU_RS31400at 859.749 kb on - strand, within PFLU_RS31400at 859.749 kb on - strand, within PFLU_RS31400at 859.749 kb on - strand, within PFLU_RS31400at 859.749 kb on - strand, within PFLU_RS31400at 859.786 kb on + strand, within PFLU_RS31400at 859.786 kb on + strand, within PFLU_RS31400at 859.787 kb on - strand, within PFLU_RS31400at 859.806 kb on + strand, within PFLU_RS31400at 859.907 kb on + strand, within PFLU_RS03765at 859.908 kb on - strand, within PFLU_RS03765at 859.908 kb on - strand, within PFLU_RS03765at 860.024 kb on + strand, within PFLU_RS03765at 860.024 kb on + strand, within PFLU_RS03765at 860.024 kb on + strand, within PFLU_RS03765at 860.024 kb on + strand, within PFLU_RS03765at 860.024 kb on + strand, within PFLU_RS03765at 860.024 kb on + strand, within PFLU_RS03765at 860.024 kb on + strand, within PFLU_RS03765at 860.024 kb on + strand, within PFLU_RS03765at 860.024 kb on + strand, within PFLU_RS03765at 860.025 kb on - strand, within PFLU_RS03765at 860.025 kb on - strand, within PFLU_RS03765at 860.025 kb on - strand, within PFLU_RS03765at 860.025 kb on - strand, within PFLU_RS03765at 860.025 kb on - strand, within PFLU_RS03765at 860.025 kb on - strand, within PFLU_RS03765at 860.025 kb on - strand, within PFLU_RS03765at 860.025 kb on - strand, within PFLU_RS03765at 860.025 kb on - strand, within PFLU_RS03765at 860.025 kb on - strand, within PFLU_RS03765at 860.025 kb on - strand, within PFLU_RS03765at 860.071 kb on + strand, within PFLU_RS03765at 860.143 kb on + strand, within PFLU_RS03765at 860.164 kb on + strand, within PFLU_RS03765at 860.164 kb on + strand, within PFLU_RS03765at 860.165 kb on - strand, within PFLU_RS03765at 860.253 kb on - strand, within PFLU_RS03765at 860.319 kb on - strand, within PFLU_RS03765at 860.396 kb on + strand, within PFLU_RS03765at 860.396 kb on + strand, within PFLU_RS03765at 860.397 kb on - strand, within PFLU_RS03765at 860.397 kb on - strand, within PFLU_RS03765at 860.397 kb on - strand, within PFLU_RS03765at 860.397 kb on - strand, within PFLU_RS03765at 860.397 kb on - strand, within PFLU_RS03765at 860.397 kb on - strand, within PFLU_RS03765at 860.397 kb on - strand, within PFLU_RS03765at 860.402 kb on + strand, within PFLU_RS03765at 860.402 kb on + strand, within PFLU_RS03765at 860.402 kb on + strand, within PFLU_RS03765at 860.403 kb on - strand, within PFLU_RS03765at 860.403 kb on - strand, within PFLU_RS03765at 860.403 kb on - strand, within PFLU_RS03765at 860.403 kb on - strand, within PFLU_RS03765at 860.403 kb on - strand, within PFLU_RS03765at 860.403 kb on - strand, within PFLU_RS03765at 860.424 kb on + strand, within PFLU_RS03765at 860.424 kb on + strand, within PFLU_RS03765at 860.425 kb on - strand, within PFLU_RS03765at 860.432 kb on + strand, within PFLU_RS03765at 860.432 kb on + strand, within PFLU_RS03765at 860.432 kb on + strand, within PFLU_RS03765at 860.433 kb on - strand, within PFLU_RS03765at 860.720 kb on + strandat 860.720 kb on + strandat 860.720 kb on + strandat 860.721 kb on - strandat 860.726 kb on + strandat 860.727 kb on - strandat 860.891 kb on + strandat 860.891 kb on + strandat 860.891 kb on + strandat 860.891 kb on + strandat 860.892 kb on - strandat 860.892 kb on - strandat 860.892 kb on - strandat 860.892 kb on - strandat 860.892 kb on - strandat 860.892 kb on - strandat 860.892 kb on - strandat 861.029 kb on + strand, within PFLU_RS03770at 861.030 kb on - strand, within PFLU_RS03770at 861.086 kb on + strand, within PFLU_RS03770at 861.086 kb on + strand, within PFLU_RS03770at 861.086 kb on + strand, within PFLU_RS03770at 861.086 kb on + strand, within PFLU_RS03770at 861.086 kb on + strand, within PFLU_RS03770at 861.086 kb on + strand, within PFLU_RS03770at 861.086 kb on + strand, within PFLU_RS03770at 861.087 kb on - strand, within PFLU_RS03770at 861.087 kb on - strand, within PFLU_RS03770at 861.087 kb on - strand, within PFLU_RS03770at 861.087 kb on - strand, within PFLU_RS03770at 861.087 kb on - strand, within PFLU_RS03770at 861.087 kb on - strand, within PFLU_RS03770at 861.087 kb on - strand, within PFLU_RS03770at 861.087 kb on - strand, within PFLU_RS03770at 861.187 kb on + strand, within PFLU_RS03770at 861.264 kb on + strand, within PFLU_RS03770at 861.264 kb on + strand, within PFLU_RS03770at 861.288 kb on - strand, within PFLU_RS03770at 861.398 kb on + strand, within PFLU_RS03770at 861.398 kb on + strand, within PFLU_RS03770at 861.398 kb on + strand, within PFLU_RS03770at 861.399 kb on - strand, within PFLU_RS03770at 861.399 kb on - strand, within PFLU_RS03770at 861.399 kb on - strand, within PFLU_RS03770at 861.458 kb on + strand, within PFLU_RS03770at 861.458 kb on + strand, within PFLU_RS03770at 861.485 kb on + strand, within PFLU_RS03770at 861.485 kb on + strand, within PFLU_RS03770at 861.486 kb on - strand, within PFLU_RS03770at 861.486 kb on - strand, within PFLU_RS03770at 861.486 kb on - strand, within PFLU_RS03770at 861.795 kb on - strand, within PFLU_RS03770at 861.795 kb on - strand, within PFLU_RS03770at 861.795 kb on - strand, within PFLU_RS03770at 861.818 kb on + strand, within PFLU_RS03770at 861.818 kb on + strand, within PFLU_RS03770at 861.818 kb on + strand, within PFLU_RS03770at 861.818 kb on + strand, within PFLU_RS03770at 861.818 kb on + strand, within PFLU_RS03770at 861.819 kb on - strand, within PFLU_RS03770at 861.819 kb on - strand, within PFLU_RS03770at 861.819 kb on - strand, within PFLU_RS03770at 861.819 kb on - strand, within PFLU_RS03770at 861.819 kb on - strand, within PFLU_RS03770at 861.819 kb on - strand, within PFLU_RS03770at 861.819 kb on - strand, within PFLU_RS03770at 861.819 kb on - strand, within PFLU_RS03770at 861.957 kb on - strand, within PFLU_RS03770at 862.195 kb on + strand, within PFLU_RS03770at 862.196 kb on - strand, within PFLU_RS03770at 862.196 kb on - strand, within PFLU_RS03770at 862.196 kb on - strand, within PFLU_RS03770at 862.436 kb on + strand, within PFLU_RS03770at 862.437 kb on - strand, within PFLU_RS03770at 862.487 kb on + strandat 862.487 kb on + strandat 862.487 kb on + strandat 862.487 kb on + strandat 862.488 kb on - strandat 862.488 kb on - strandat 862.488 kb on - strandat 862.635 kb on - strandat 862.635 kb on - strandat 862.689 kb on - strandat 862.747 kb on + strandat 862.747 kb on + strandat 862.747 kb on + strandat 862.763 kb on - strandat 862.905 kb on + strand, within PFLU_RS03775at 862.906 kb on - strand, within PFLU_RS03775at 862.923 kb on + strand, within PFLU_RS03775at 862.924 kb on - strand, within PFLU_RS03775at 862.924 kb on - strand, within PFLU_RS03775at 863.107 kb on + strand, within PFLU_RS03775at 863.108 kb on - strand, within PFLU_RS03775at 863.121 kb on + strand, within PFLU_RS03775at 863.162 kb on - strand, within PFLU_RS03775at 863.191 kb on + strand, within PFLU_RS03775at 863.191 kb on + strand, within PFLU_RS03775at 863.191 kb on + strand, within PFLU_RS03775at 863.192 kb on - strand, within PFLU_RS03775at 863.234 kb on - strand, within PFLU_RS03775at 863.277 kb on + strand, within PFLU_RS03775at 863.277 kb on + strand, within PFLU_RS03775at 863.278 kb on - strand, within PFLU_RS03775at 863.289 kb on + strand, within PFLU_RS03775at 863.289 kb on + strand, within PFLU_RS03775at 863.290 kb on - strand, within PFLU_RS03775at 863.403 kb on + strand, within PFLU_RS03775at 863.403 kb on + strand, within PFLU_RS03775at 863.403 kb on + strand, within PFLU_RS03775at 863.403 kb on + strand, within PFLU_RS03775at 863.404 kb on - strand, within PFLU_RS03775at 863.404 kb on - strand, within PFLU_RS03775at 863.404 kb on - strand, within PFLU_RS03775at 863.404 kb on - strand, within PFLU_RS03775at 863.404 kb on - strand, within PFLU_RS03775at 863.404 kb on - strand, within PFLU_RS03775at 863.454 kb on + strand, within PFLU_RS03775at 863.455 kb on - strand, within PFLU_RS03775at 863.455 kb on - strand, within PFLU_RS03775at 863.466 kb on + strand, within PFLU_RS03775at 863.466 kb on + strand, within PFLU_RS03775at 863.466 kb on + strand, within PFLU_RS03775at 863.466 kb on + strand, within PFLU_RS03775at 863.467 kb on - strand, within PFLU_RS03775

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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859,748 + PFLU_RS31400 0.54 -0.3
859,748 + PFLU_RS31400 0.54 -0.2
859,748 + PFLU_RS31400 0.54 +0.6
859,748 + PFLU_RS31400 0.54 +0.4
859,748 + PFLU_RS31400 0.54 -0.4
859,749 - PFLU_RS31400 0.55 +0.2
859,749 - PFLU_RS31400 0.55 +0.4
859,749 - PFLU_RS31400 0.55 -0.5
859,749 - PFLU_RS31400 0.55 -0.2
859,749 - PFLU_RS31400 0.55 -0.8
859,749 - PFLU_RS31400 0.55 +0.3
859,749 - PFLU_RS31400 0.55 +0.8
859,749 - PFLU_RS31400 0.55 -0.9
859,786 + PFLU_RS31400 0.75 +0.1
859,786 + PFLU_RS31400 0.75 +0.5
859,787 - PFLU_RS31400 0.75 -3.7
859,806 + PFLU_RS31400 0.86 +0.6
859,907 + PFLU_RS03765 0.10 -1.0
859,908 - PFLU_RS03765 0.11 -2.7
859,908 - PFLU_RS03765 0.11 -0.9
860,024 + PFLU_RS03765 0.23 -2.7
860,024 + PFLU_RS03765 0.23 -2.4
860,024 + PFLU_RS03765 0.23 -3.2
860,024 + PFLU_RS03765 0.23 -0.3
860,024 + PFLU_RS03765 0.23 -2.0
860,024 + PFLU_RS03765 0.23 -2.9
860,024 + PFLU_RS03765 0.23 -2.5
860,024 + PFLU_RS03765 0.23 -2.6
860,024 + PFLU_RS03765 0.23 -2.2
860,025 - PFLU_RS03765 0.23 -2.9
860,025 - PFLU_RS03765 0.23 -4.7
860,025 - PFLU_RS03765 0.23 -3.3
860,025 - PFLU_RS03765 0.23 -2.6
860,025 - PFLU_RS03765 0.23 -2.9
860,025 - PFLU_RS03765 0.23 -2.0
860,025 - PFLU_RS03765 0.23 -2.5
860,025 - PFLU_RS03765 0.23 -2.2
860,025 - PFLU_RS03765 0.23 -3.8
860,025 - PFLU_RS03765 0.23 -2.5
860,025 - PFLU_RS03765 0.23 -3.6
860,071 + PFLU_RS03765 0.28 -1.9
860,143 + PFLU_RS03765 0.36 -1.9
860,164 + PFLU_RS03765 0.38 -3.0
860,164 + PFLU_RS03765 0.38 -1.7
860,165 - PFLU_RS03765 0.39 -1.6
860,253 - PFLU_RS03765 0.48 -3.4
860,319 - PFLU_RS03765 0.55 -2.5
860,396 + PFLU_RS03765 0.64 -3.3
860,396 + PFLU_RS03765 0.64 -1.3
860,397 - PFLU_RS03765 0.64 -2.2
860,397 - PFLU_RS03765 0.64 -2.1
860,397 - PFLU_RS03765 0.64 -3.1
860,397 - PFLU_RS03765 0.64 -2.5
860,397 - PFLU_RS03765 0.64 -2.7
860,397 - PFLU_RS03765 0.64 -1.8
860,397 - PFLU_RS03765 0.64 -2.1
860,402 + PFLU_RS03765 0.64 -3.5
860,402 + PFLU_RS03765 0.64 -3.6
860,402 + PFLU_RS03765 0.64 -2.5
860,403 - PFLU_RS03765 0.64 -2.6
860,403 - PFLU_RS03765 0.64 -0.2
860,403 - PFLU_RS03765 0.64 -2.7
860,403 - PFLU_RS03765 0.64 -2.8
860,403 - PFLU_RS03765 0.64 -2.7
860,403 - PFLU_RS03765 0.64 -4.2
860,424 + PFLU_RS03765 0.67 -2.6
860,424 + PFLU_RS03765 0.67 -1.4
860,425 - PFLU_RS03765 0.67 -3.9
860,432 + PFLU_RS03765 0.68 -2.5
860,432 + PFLU_RS03765 0.68 -3.1
860,432 + PFLU_RS03765 0.68 -1.2
860,433 - PFLU_RS03765 0.68 -2.3
860,720 + -2.7
860,720 + -3.0
860,720 + -2.2
860,721 - -2.9
860,726 + -1.0
860,727 - -2.8
860,891 + -0.6
860,891 + -2.1
860,891 + -3.8
860,891 + -1.5
860,892 - -2.6
860,892 - -2.5
860,892 - -3.0
860,892 - -3.2
860,892 - -3.6
860,892 - -2.8
860,892 - -3.9
861,029 + PFLU_RS03770 0.15 -2.0
861,030 - PFLU_RS03770 0.15 -3.7
861,086 + PFLU_RS03770 0.18 -0.4
861,086 + PFLU_RS03770 0.18 -2.2
861,086 + PFLU_RS03770 0.18 -2.6
861,086 + PFLU_RS03770 0.18 -2.4
861,086 + PFLU_RS03770 0.18 -3.0
861,086 + PFLU_RS03770 0.18 -1.9
861,086 + PFLU_RS03770 0.18 -1.5
861,087 - PFLU_RS03770 0.18 -3.7
861,087 - PFLU_RS03770 0.18 -3.5
861,087 - PFLU_RS03770 0.18 -2.4
861,087 - PFLU_RS03770 0.18 -2.2
861,087 - PFLU_RS03770 0.18 -0.5
861,087 - PFLU_RS03770 0.18 -1.1
861,087 - PFLU_RS03770 0.18 -2.1
861,087 - PFLU_RS03770 0.18 -3.8
861,187 + PFLU_RS03770 0.24 -3.3
861,264 + PFLU_RS03770 0.28 -1.4
861,264 + PFLU_RS03770 0.28 -1.6
861,288 - PFLU_RS03770 0.29 -0.8
861,398 + PFLU_RS03770 0.35 -3.7
861,398 + PFLU_RS03770 0.35 -2.8
861,398 + PFLU_RS03770 0.35 -3.2
861,399 - PFLU_RS03770 0.35 -1.9
861,399 - PFLU_RS03770 0.35 -1.1
861,399 - PFLU_RS03770 0.35 -2.8
861,458 + PFLU_RS03770 0.38 -3.2
861,458 + PFLU_RS03770 0.38 -4.3
861,485 + PFLU_RS03770 0.39 -2.6
861,485 + PFLU_RS03770 0.39 -1.7
861,486 - PFLU_RS03770 0.39 -4.1
861,486 - PFLU_RS03770 0.39 -0.8
861,486 - PFLU_RS03770 0.39 -0.8
861,795 - PFLU_RS03770 0.56 -1.9
861,795 - PFLU_RS03770 0.56 -3.2
861,795 - PFLU_RS03770 0.56 -3.0
861,818 + PFLU_RS03770 0.57 -3.7
861,818 + PFLU_RS03770 0.57 -1.3
861,818 + PFLU_RS03770 0.57 -2.7
861,818 + PFLU_RS03770 0.57 -0.6
861,818 + PFLU_RS03770 0.57 -2.3
861,819 - PFLU_RS03770 0.57 -2.2
861,819 - PFLU_RS03770 0.57 -3.2
861,819 - PFLU_RS03770 0.57 -2.6
861,819 - PFLU_RS03770 0.57 -1.1
861,819 - PFLU_RS03770 0.57 -3.7
861,819 - PFLU_RS03770 0.57 -2.4
861,819 - PFLU_RS03770 0.57 -0.6
861,819 - PFLU_RS03770 0.57 -1.6
861,957 - PFLU_RS03770 0.64 -1.1
862,195 + PFLU_RS03770 0.77 -4.2
862,196 - PFLU_RS03770 0.77 -3.2
862,196 - PFLU_RS03770 0.77 -2.1
862,196 - PFLU_RS03770 0.77 -3.5
862,436 + PFLU_RS03770 0.89 -1.4
862,437 - PFLU_RS03770 0.89 -4.4
862,487 + -0.5
862,487 + -1.9
862,487 + -2.7
862,487 + -2.3
862,488 - -2.5
862,488 - -2.8
862,488 - -2.9
862,635 - -0.6
862,635 - -0.4
862,689 - -0.5
862,747 + +0.3
862,747 + +1.0
862,747 + +0.1
862,763 - -0.6
862,905 + PFLU_RS03775 0.10 +0.8
862,906 - PFLU_RS03775 0.11 -0.1
862,923 + PFLU_RS03775 0.12 +1.0
862,924 - PFLU_RS03775 0.13 -1.4
862,924 - PFLU_RS03775 0.13 -0.1
863,107 + PFLU_RS03775 0.33 +0.4
863,108 - PFLU_RS03775 0.33 +0.4
863,121 + PFLU_RS03775 0.34 -1.0
863,162 - PFLU_RS03775 0.39 +0.0
863,191 + PFLU_RS03775 0.42 -0.5
863,191 + PFLU_RS03775 0.42 +0.5
863,191 + PFLU_RS03775 0.42 +0.1
863,192 - PFLU_RS03775 0.42 +0.8
863,234 - PFLU_RS03775 0.47 +0.3
863,277 + PFLU_RS03775 0.52 -0.3
863,277 + PFLU_RS03775 0.52 -0.3
863,278 - PFLU_RS03775 0.52 +0.3
863,289 + PFLU_RS03775 0.53 -0.2
863,289 + PFLU_RS03775 0.53 +0.2
863,290 - PFLU_RS03775 0.53 +0.2
863,403 + PFLU_RS03775 0.66 +1.4
863,403 + PFLU_RS03775 0.66 -0.2
863,403 + PFLU_RS03775 0.66 +0.8
863,403 + PFLU_RS03775 0.66 -0.0
863,404 - PFLU_RS03775 0.66 +0.6
863,404 - PFLU_RS03775 0.66 -0.7
863,404 - PFLU_RS03775 0.66 -0.6
863,404 - PFLU_RS03775 0.66 +0.7
863,404 - PFLU_RS03775 0.66 -0.4
863,404 - PFLU_RS03775 0.66 +0.5
863,454 + PFLU_RS03775 0.71 +0.8
863,455 - PFLU_RS03775 0.72 -1.0
863,455 - PFLU_RS03775 0.72 -1.2
863,466 + PFLU_RS03775 0.73 -0.3
863,466 + PFLU_RS03775 0.73 +0.4
863,466 + PFLU_RS03775 0.73 +1.2
863,466 + PFLU_RS03775 0.73 -1.2
863,467 - PFLU_RS03775 0.73 -0.9

Or see this region's nucleotide sequence