Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS02490

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS02485 and PFLU_RS02490 are separated by 133 nucleotidesPFLU_RS02490 and PFLU_RS02495 are separated by 122 nucleotidesPFLU_RS02495 and PFLU_RS02500 are separated by 16 nucleotides PFLU_RS02485: PFLU_RS02485 - HAMP domain-containing protein, at 571,506 to 573,035 _RS02485 PFLU_RS02490: PFLU_RS02490 - phosphoserine phosphatase SerB, at 573,169 to 574,383 _RS02490 PFLU_RS02495: PFLU_RS02495 - phosphatidylserine decarboxylase, at 574,506 to 575,366 _RS02495 PFLU_RS02500: PFLU_RS02500 - sulfurtransferase, at 575,383 to 576,198 _RS02500 Position (kb) 573 574 575Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 573.135 kb on - strandat 573.190 kb on - strandat 573.190 kb on - strandat 573.190 kb on - strandat 573.190 kb on - strandat 573.219 kb on + strandat 573.219 kb on + strandat 573.219 kb on + strandat 573.219 kb on + strandat 573.220 kb on - strandat 573.220 kb on - strandat 573.220 kb on - strandat 573.228 kb on + strandat 573.370 kb on - strand, within PFLU_RS02490at 573.370 kb on - strand, within PFLU_RS02490at 573.370 kb on - strand, within PFLU_RS02490at 573.370 kb on - strand, within PFLU_RS02490at 573.376 kb on + strand, within PFLU_RS02490at 573.376 kb on + strand, within PFLU_RS02490at 573.376 kb on + strand, within PFLU_RS02490at 573.376 kb on + strand, within PFLU_RS02490at 573.376 kb on + strand, within PFLU_RS02490at 573.377 kb on - strand, within PFLU_RS02490at 573.377 kb on - strand, within PFLU_RS02490at 573.377 kb on - strand, within PFLU_RS02490at 573.377 kb on - strand, within PFLU_RS02490at 573.425 kb on - strand, within PFLU_RS02490at 573.532 kb on + strand, within PFLU_RS02490at 573.532 kb on + strand, within PFLU_RS02490at 573.532 kb on + strand, within PFLU_RS02490at 573.533 kb on - strand, within PFLU_RS02490at 573.533 kb on - strand, within PFLU_RS02490at 573.533 kb on - strand, within PFLU_RS02490at 573.533 kb on - strand, within PFLU_RS02490at 573.533 kb on - strand, within PFLU_RS02490at 574.000 kb on + strand, within PFLU_RS02490at 574.001 kb on - strand, within PFLU_RS02490at 574.033 kb on + strand, within PFLU_RS02490at 574.033 kb on + strand, within PFLU_RS02490at 574.033 kb on + strand, within PFLU_RS02490at 574.034 kb on - strand, within PFLU_RS02490at 574.034 kb on - strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.072 kb on + strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.073 kb on - strand, within PFLU_RS02490at 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.345 kb on + strandat 574.346 kb on - strandat 574.346 kb on - strandat 574.346 kb on - strandat 574.346 kb on - strandat 574.346 kb on - strandat 574.346 kb on - strandat 574.346 kb on - strandat 574.346 kb on - strandat 574.346 kb on - strandat 574.346 kb on - strandat 574.346 kb on - strandat 574.346 kb on - strandat 574.382 kb on - strandat 574.382 kb on - strandat 574.436 kb on + strandat 574.436 kb on + strandat 574.437 kb on - strandat 574.437 kb on - strandat 574.437 kb on - strandat 574.437 kb on - strandat 574.437 kb on - strandat 574.437 kb on - strandat 574.437 kb on - strandat 574.450 kb on + strandat 574.450 kb on + strandat 574.450 kb on + strandat 574.450 kb on + strandat 574.450 kb on + strandat 574.450 kb on + strandat 574.450 kb on + strandat 574.450 kb on + strandat 574.450 kb on + strandat 574.450 kb on + strandat 574.450 kb on + strandat 574.451 kb on - strandat 574.451 kb on - strandat 574.451 kb on - strandat 574.451 kb on - strandat 574.451 kb on - strandat 574.451 kb on - strandat 575.369 kb on - strandat 575.369 kb on - strandat 575.378 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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573,135 - +0.0
573,190 - -2.2
573,190 - -3.0
573,190 - -3.0
573,190 - -3.2
573,219 + -4.2
573,219 + -3.1
573,219 + -3.9
573,219 + -3.1
573,220 - -3.1
573,220 - -3.6
573,220 - -4.7
573,228 + -3.0
573,370 - PFLU_RS02490 0.17 -3.6
573,370 - PFLU_RS02490 0.17 -2.7
573,370 - PFLU_RS02490 0.17 -1.9
573,370 - PFLU_RS02490 0.17 -3.6
573,376 + PFLU_RS02490 0.17 -3.7
573,376 + PFLU_RS02490 0.17 -4.3
573,376 + PFLU_RS02490 0.17 -3.9
573,376 + PFLU_RS02490 0.17 -2.7
573,376 + PFLU_RS02490 0.17 -1.1
573,377 - PFLU_RS02490 0.17 -1.5
573,377 - PFLU_RS02490 0.17 -2.8
573,377 - PFLU_RS02490 0.17 -2.9
573,377 - PFLU_RS02490 0.17 -2.6
573,425 - PFLU_RS02490 0.21 -2.2
573,532 + PFLU_RS02490 0.30 -2.7
573,532 + PFLU_RS02490 0.30 -3.9
573,532 + PFLU_RS02490 0.30 -4.1
573,533 - PFLU_RS02490 0.30 -2.4
573,533 - PFLU_RS02490 0.30 -3.6
573,533 - PFLU_RS02490 0.30 -0.9
573,533 - PFLU_RS02490 0.30 -2.0
573,533 - PFLU_RS02490 0.30 -3.6
574,000 + PFLU_RS02490 0.68 -3.5
574,001 - PFLU_RS02490 0.68 -4.0
574,033 + PFLU_RS02490 0.71 -3.4
574,033 + PFLU_RS02490 0.71 -2.9
574,033 + PFLU_RS02490 0.71 -2.7
574,034 - PFLU_RS02490 0.71 -4.0
574,034 - PFLU_RS02490 0.71 -3.0
574,072 + PFLU_RS02490 0.74 -2.8
574,072 + PFLU_RS02490 0.74 -2.8
574,072 + PFLU_RS02490 0.74 -3.5
574,072 + PFLU_RS02490 0.74 -3.6
574,072 + PFLU_RS02490 0.74 -3.0
574,072 + PFLU_RS02490 0.74 -4.1
574,072 + PFLU_RS02490 0.74 -2.1
574,072 + PFLU_RS02490 0.74 -4.1
574,072 + PFLU_RS02490 0.74 -2.7
574,072 + PFLU_RS02490 0.74 -2.8
574,072 + PFLU_RS02490 0.74 -2.4
574,072 + PFLU_RS02490 0.74 -2.4
574,072 + PFLU_RS02490 0.74 -3.0
574,073 - PFLU_RS02490 0.74 -4.1
574,073 - PFLU_RS02490 0.74 -3.2
574,073 - PFLU_RS02490 0.74 -3.4
574,073 - PFLU_RS02490 0.74 -4.0
574,073 - PFLU_RS02490 0.74 -2.6
574,073 - PFLU_RS02490 0.74 -4.0
574,073 - PFLU_RS02490 0.74 -2.1
574,073 - PFLU_RS02490 0.74 -0.9
574,073 - PFLU_RS02490 0.74 -1.9
574,073 - PFLU_RS02490 0.74 -1.1
574,073 - PFLU_RS02490 0.74 -1.9
574,073 - PFLU_RS02490 0.74 -5.0
574,073 - PFLU_RS02490 0.74 -2.5
574,345 + -3.6
574,345 + -3.7
574,345 + -2.7
574,345 + -1.9
574,345 + -2.8
574,345 + -4.0
574,345 + -4.3
574,345 + -3.6
574,345 + -2.3
574,345 + -2.1
574,345 + -4.5
574,345 + -4.2
574,346 - -3.4
574,346 - -1.9
574,346 - -3.0
574,346 - -2.4
574,346 - -3.7
574,346 - -3.7
574,346 - -1.7
574,346 - -2.6
574,346 - -3.5
574,346 - -3.9
574,346 - -2.8
574,346 - -2.3
574,382 - +1.1
574,382 - +0.6
574,436 + -0.5
574,436 + +0.6
574,437 - +0.1
574,437 - -0.3
574,437 - +0.4
574,437 - -0.6
574,437 - +0.2
574,437 - +0.3
574,437 - +0.0
574,450 + +0.3
574,450 + -0.1
574,450 + -0.8
574,450 + +0.1
574,450 + -0.1
574,450 + +0.2
574,450 + -1.2
574,450 + -0.5
574,450 + +0.5
574,450 + -0.1
574,450 + -0.0
574,451 - +0.7
574,451 - +0.0
574,451 - +0.3
574,451 - +1.1
574,451 - -0.1
574,451 - +0.6
575,369 - -0.0
575,369 - -0.3
575,378 - +0.1

Or see this region's nucleotide sequence