Strain Fitness in Pseudomonas simiae WCS417 around PS417_07520

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07515 and PS417_07520 are separated by 191 nucleotidesPS417_07520 and PS417_07525 are separated by 134 nucleotidesPS417_07525 and PS417_07530 are separated by 13 nucleotides PS417_07515: PS417_07515 - aconitate hydratase, at 1,651,324 to 1,654,065 _07515 PS417_07520: PS417_07520 - 23S rRNA methyltransferase, at 1,654,257 to 1,655,333 _07520 PS417_07525: PS417_07525 - sulfurtransferase, at 1,655,468 to 1,655,719 _07525 PS417_07530: PS417_07530 - multidrug transporter, at 1,655,733 to 1,657,127 _07530 Position (kb) 1654 1655 1656Strain fitness (log2 ratio) -2 -1 0 1 2at 1653.461 kb on + strand, within PS417_07515at 1653.506 kb on + strand, within PS417_07515at 1653.596 kb on + strand, within PS417_07515at 1653.597 kb on - strand, within PS417_07515at 1653.597 kb on - strand, within PS417_07515at 1653.597 kb on - strand, within PS417_07515at 1653.785 kb on - strand, within PS417_07515at 1654.001 kb on + strandat 1654.001 kb on + strandat 1654.001 kb on + strandat 1654.002 kb on - strandat 1654.002 kb on - strandat 1654.007 kb on + strandat 1654.007 kb on + strandat 1654.014 kb on + strandat 1654.015 kb on - strandat 1654.036 kb on - strandat 1654.036 kb on - strandat 1654.036 kb on - strandat 1654.119 kb on + strandat 1654.120 kb on - strandat 1654.128 kb on - strandat 1654.128 kb on - strandat 1654.128 kb on - strandat 1654.151 kb on - strandat 1654.164 kb on + strandat 1654.164 kb on + strandat 1654.165 kb on - strandat 1654.170 kb on + strandat 1654.170 kb on + strandat 1654.171 kb on - strandat 1654.271 kb on + strandat 1654.271 kb on + strandat 1655.028 kb on - strand, within PS417_07520at 1655.262 kb on + strandat 1655.390 kb on + strandat 1655.390 kb on + strandat 1655.390 kb on + strandat 1655.390 kb on + strandat 1655.391 kb on - strandat 1655.404 kb on + strandat 1655.467 kb on + strandat 1655.467 kb on + strandat 1656.070 kb on + strand, within PS417_07530at 1656.071 kb on - strand, within PS417_07530at 1656.127 kb on + strand, within PS417_07530at 1656.127 kb on + strand, within PS417_07530at 1656.128 kb on - strand, within PS417_07530at 1656.235 kb on + strand, within PS417_07530

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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1,653,461 + PS417_07515 0.78 -0.7
1,653,506 + PS417_07515 0.80 +0.6
1,653,596 + PS417_07515 0.83 -0.2
1,653,597 - PS417_07515 0.83 +0.6
1,653,597 - PS417_07515 0.83 -0.6
1,653,597 - PS417_07515 0.83 +0.1
1,653,785 - PS417_07515 0.90 +0.3
1,654,001 + +0.0
1,654,001 + +1.5
1,654,001 + -0.9
1,654,002 - -2.6
1,654,002 - -0.6
1,654,007 + -0.3
1,654,007 + -2.3
1,654,014 + -1.3
1,654,015 - +0.1
1,654,036 - +0.2
1,654,036 - -0.0
1,654,036 - -0.6
1,654,119 + +0.2
1,654,120 - +0.8
1,654,128 - +0.5
1,654,128 - +1.3
1,654,128 - +0.7
1,654,151 - +0.9
1,654,164 + -1.6
1,654,164 + -0.7
1,654,165 - +2.7
1,654,170 + -0.9
1,654,170 + -0.5
1,654,171 - +0.1
1,654,271 + +0.4
1,654,271 + -1.0
1,655,028 - PS417_07520 0.72 +0.8
1,655,262 + +0.7
1,655,390 + +2.2
1,655,390 + -0.2
1,655,390 + -1.4
1,655,390 + -1.0
1,655,391 - +1.7
1,655,404 + +0.7
1,655,467 + -1.1
1,655,467 + -0.4
1,656,070 + PS417_07530 0.24 -0.1
1,656,071 - PS417_07530 0.24 +0.0
1,656,127 + PS417_07530 0.28 +0.2
1,656,127 + PS417_07530 0.28 +0.1
1,656,128 - PS417_07530 0.28 -0.2
1,656,235 + PS417_07530 0.36 -0.2

Or see this region's nucleotide sequence