Strain Fitness in Pseudomonas fluorescens SBW25

Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS19135

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	acetate (C)
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4,326,127	+			+0.5
4,326,127	+			+0.4
4,326,128	-			-0.1
4,326,128	-			+0.1
4,326,320	+	PFLU_RS19130	0.25	+0.1
4,326,320	+	PFLU_RS19130	0.25	+0.1
4,326,321	-	PFLU_RS19130	0.25	-0.6
4,326,321	-	PFLU_RS19130	0.25	+1.4
4,326,321	-	PFLU_RS19130	0.25	-1.5
4,326,321	-	PFLU_RS19130	0.25	+0.8
4,326,362	+	PFLU_RS19130	0.30	-0.0
4,326,415	+	PFLU_RS19130	0.37	-0.6
4,326,415	+	PFLU_RS19130	0.37	+1.1
4,326,416	-	PFLU_RS19130	0.37	+0.7
4,326,416	-	PFLU_RS19130	0.37	+0.4
4,326,425	-	PFLU_RS19130	0.38	-0.1
4,326,701	+	PFLU_RS19130	0.73	+1.0
4,326,716	-	PFLU_RS19130	0.75	-0.8
4,326,716	-	PFLU_RS19130	0.75	+1.3
4,326,820	+	PFLU_RS19130	0.89	+0.3
4,326,820	+	PFLU_RS19130	0.89	+1.2
4,326,820	+	PFLU_RS19130	0.89	+0.3
4,326,820	+	PFLU_RS19130	0.89	+0.2
4,326,820	+	PFLU_RS19130	0.89	+0.4
4,326,820	+	PFLU_RS19130	0.89	-0.5
4,326,820	+	PFLU_RS19130	0.89	+0.6
4,326,820	+	PFLU_RS19130	0.89	+0.9
4,326,820	+	PFLU_RS19130	0.89	+1.2
4,326,820	+	PFLU_RS19130	0.89	+0.8
4,326,820	+	PFLU_RS19130	0.89	-0.9
4,326,820	+	PFLU_RS19130	0.89	-0.5
4,326,821	-	PFLU_RS19130	0.89	-0.4
4,326,821	-	PFLU_RS19130	0.89	+0.3
4,326,821	-	PFLU_RS19130	0.89	-0.1
4,326,821	-	PFLU_RS19130	0.89	+0.1
4,326,821	-	PFLU_RS19130	0.89	-0.5
4,326,821	-	PFLU_RS19130	0.89	+0.0
4,326,821	-	PFLU_RS19130	0.89	+0.8
4,326,821	-	PFLU_RS19130	0.89	-0.8
4,326,821	-	PFLU_RS19130	0.89	+1.5
4,326,821	-	PFLU_RS19130	0.89	+0.4
4,326,821	-	PFLU_RS19130	0.89	+0.6
4,326,821	-	PFLU_RS19130	0.89	+0.0
4,326,821	-	PFLU_RS19130	0.89	-0.1
4,326,825	-	PFLU_RS19130	0.89	+0.3
4,326,885	-			+0.5
4,326,892	+			+0.5
4,326,893	-			-0.4
4,326,984	-			+1.7
4,327,036	+			-0.8
4,327,036	+			-0.4
4,327,036	+			+0.4
4,327,036	+			+0.3
4,327,036	+			+0.5
4,327,036	+			+0.7
4,327,036	+			+0.1
4,327,036	+			+0.3
4,327,036	+			+0.0
4,327,036	+			-0.8
4,327,036	+			-0.4
4,327,036	+			+0.5
4,327,036	+			-0.2
4,327,036	+			-0.2
4,327,036	+			-0.0
4,327,036	+			+0.6
4,327,037	-			-0.8
4,327,037	-			-0.2
4,327,037	-			-1.2
4,327,037	-			+1.0
4,327,037	-			-0.2
4,327,037	-			-0.1
4,327,037	-			+0.2
4,327,037	-			+0.6
4,327,037	-			-0.3
4,327,037	-			+0.3
4,327,037	-			-0.1
4,327,037	-			-0.1
4,327,037	-			-0.3
4,327,037	-			-1.2
4,327,037	-			-0.7
4,327,045	+			+1.0
4,327,089	-	PFLU_RS19135	0.10	+0.7
4,327,117	+	PFLU_RS19135	0.13	+0.6
4,327,173	+	PFLU_RS19135	0.19	+0.3
4,327,174	-	PFLU_RS19135	0.20	-1.0
4,327,174	-	PFLU_RS19135	0.20	+0.4
4,327,174	-	PFLU_RS19135	0.20	-0.3
4,327,174	-	PFLU_RS19135	0.20	-0.1
4,327,174	-	PFLU_RS19135	0.20	+0.1
4,327,174	-	PFLU_RS19135	0.20	+0.9
4,327,174	-	PFLU_RS19135	0.20	-0.3
4,327,393	-	PFLU_RS19135	0.44	+0.5
4,327,422	+	PFLU_RS19135	0.47	+0.4
4,327,422	+	PFLU_RS19135	0.47	-0.7
4,327,561	+	PFLU_RS19135	0.63	-0.6
4,327,616	+	PFLU_RS19135	0.69	-0.3
4,327,616	+	PFLU_RS19135	0.69	+1.6
4,327,616	+	PFLU_RS19135	0.69	-0.1
4,327,617	-	PFLU_RS19135	0.69	+0.3
4,327,735	+	PFLU_RS19135	0.82	+0.7
4,327,735	+	PFLU_RS19135	0.82	+0.4
4,327,934	+			+0.6
4,327,949	-			+0.2
4,327,949	-			-0.4
4,327,979	-			+0.0
4,327,979	-			+0.1
4,327,979	-			+0.5
4,327,979	-			-0.7
4,328,202	+	PFLU_RS19140	0.15	+0.0
4,328,202	+	PFLU_RS19140	0.15	+0.2
4,328,202	+	PFLU_RS19140	0.15	-0.2
4,328,203	-	PFLU_RS19140	0.16	-0.1
4,328,203	-	PFLU_RS19140	0.16	+0.2
4,328,203	-	PFLU_RS19140	0.16	-0.6
4,328,383	+	PFLU_RS19140	0.30	-0.4
4,328,384	-	PFLU_RS19140	0.31	+2.2
4,328,572	+	PFLU_RS19140	0.46	+0.6
4,328,572	+	PFLU_RS19140	0.46	-1.0
4,328,573	-	PFLU_RS19140	0.46	-0.7
4,328,573	-	PFLU_RS19140	0.46	+0.2
4,328,694	+	PFLU_RS19140	0.56	-0.7
4,328,694	+	PFLU_RS19140	0.56	-0.4
4,328,694	+	PFLU_RS19140	0.56	-0.7
4,328,694	+	PFLU_RS19140	0.56	+0.3
4,328,695	-	PFLU_RS19140	0.56	+0.3
4,328,695	-	PFLU_RS19140	0.56	+0.8
4,328,695	-	PFLU_RS19140	0.56	-0.0
4,328,695	-	PFLU_RS19140	0.56	+1.1
4,328,695	-	PFLU_RS19140	0.56	+0.1
4,328,695	-	PFLU_RS19140	0.56	+0.6
4,328,695	-	PFLU_RS19140	0.56	+0.3
4,328,695	-	PFLU_RS19140	0.56	+1.4
4,328,718	+	PFLU_RS19140	0.58	-0.6
4,328,718	+	PFLU_RS19140	0.58	+0.7
4,328,718	+	PFLU_RS19140	0.58	-1.1
4,328,718	+	PFLU_RS19140	0.58	+0.9
4,328,718	+	PFLU_RS19140	0.58	+0.0
4,328,719	-	PFLU_RS19140	0.58	-0.2
4,328,719	-	PFLU_RS19140	0.58	-1.4
4,328,719	-	PFLU_RS19140	0.58	-0.5
4,328,719	-	PFLU_RS19140	0.58	-0.5
4,328,719	-	PFLU_RS19140	0.58	-0.1
4,328,720	+	PFLU_RS19140	0.58	+0.7
4,328,720	+	PFLU_RS19140	0.58	+0.2
4,328,720	+	PFLU_RS19140	0.58	-0.1
4,328,720	+	PFLU_RS19140	0.58	+0.1
4,328,720	+	PFLU_RS19140	0.58	-0.5
4,328,720	+	PFLU_RS19140	0.58	-0.3
4,328,720	+	PFLU_RS19140	0.58	-0.5
4,328,720	+	PFLU_RS19140	0.58	+0.6
4,328,720	+	PFLU_RS19140	0.58	-0.1
4,328,720	+	PFLU_RS19140	0.58	+0.7
4,328,720	+	PFLU_RS19140	0.58	+0.4
4,328,721	-	PFLU_RS19140	0.58	-0.3
4,328,721	-	PFLU_RS19140	0.58	+0.4
4,328,721	-	PFLU_RS19140	0.58	+0.0
4,328,721	-	PFLU_RS19140	0.58	+1.1
4,328,721	-	PFLU_RS19140	0.58	-0.3
4,328,724	+	PFLU_RS19140	0.59	-1.3
4,328,724	+	PFLU_RS19140	0.59	-0.2
4,328,724	+	PFLU_RS19140	0.59	-0.6
4,328,724	+	PFLU_RS19140	0.59	+0.1
4,328,724	+	PFLU_RS19140	0.59	+0.4
4,328,724	+	PFLU_RS19140	0.59	+0.4
4,328,724	+	PFLU_RS19140	0.59	-2.0
4,328,724	+	PFLU_RS19140	0.59	+0.2
4,328,724	+	PFLU_RS19140	0.59	-0.4
4,328,724	+	PFLU_RS19140	0.59	-0.3
4,328,724	+	PFLU_RS19140	0.59	-0.4
4,328,724	+	PFLU_RS19140	0.59	+1.3
4,328,724	+	PFLU_RS19140	0.59	-0.0
4,328,724	+	PFLU_RS19140	0.59	-0.0
4,328,724	+	PFLU_RS19140	0.59	-0.1
4,328,724	+	PFLU_RS19140	0.59	-0.5
4,328,724	+	PFLU_RS19140	0.59	+0.2
4,328,724	+	PFLU_RS19140	0.59	+1.4
4,328,724	+	PFLU_RS19140	0.59	-0.3
4,328,724	+	PFLU_RS19140	0.59	+0.8
4,328,724	+	PFLU_RS19140	0.59	+0.3
4,328,724	+	PFLU_RS19140	0.59	+0.7
4,328,724	+	PFLU_RS19140	0.59	+0.6
4,328,724	+	PFLU_RS19140	0.59	+1.1
4,328,724	+	PFLU_RS19140	0.59	-1.2
4,328,724	+	PFLU_RS19140	0.59	+1.3
4,328,724	+	PFLU_RS19140	0.59	-0.2
4,328,724	+	PFLU_RS19140	0.59	+0.2
4,328,724	+	PFLU_RS19140	0.59	-0.5
4,328,724	+	PFLU_RS19140	0.59	-0.5
4,328,724	+	PFLU_RS19140	0.59	+0.9
4,328,724	+	PFLU_RS19140	0.59	+0.0
4,328,724	+	PFLU_RS19140	0.59	-0.4
4,328,724	+	PFLU_RS19140	0.59	+0.0
4,328,724	+	PFLU_RS19140	0.59	+1.1
4,328,724	+	PFLU_RS19140	0.59	+0.6
4,328,725	-	PFLU_RS19140	0.59	-0.1
4,328,725	-	PFLU_RS19140	0.59	-0.3
4,328,725	-	PFLU_RS19140	0.59	-0.4
4,328,725	-	PFLU_RS19140	0.59	+0.4
4,328,725	-	PFLU_RS19140	0.59	-0.8
4,328,725	-	PFLU_RS19140	0.59	+0.9
4,328,725	-	PFLU_RS19140	0.59	+0.1
4,328,725	-	PFLU_RS19140	0.59	+0.3
4,328,725	-	PFLU_RS19140	0.59	+0.1
4,328,725	-	PFLU_RS19140	0.59	-0.3
4,328,725	-	PFLU_RS19140	0.59	-0.5
4,328,725	-	PFLU_RS19140	0.59	+0.1
4,328,725	-	PFLU_RS19140	0.59	-1.4
4,328,725	-	PFLU_RS19140	0.59	-0.4
4,328,725	-	PFLU_RS19140	0.59	+0.3
4,328,725	-	PFLU_RS19140	0.59	-0.6
4,328,725	-	PFLU_RS19140	0.59	-0.8
4,328,725	-	PFLU_RS19140	0.59	-0.0
4,328,725	-	PFLU_RS19140	0.59	+0.1
4,328,725	-	PFLU_RS19140	0.59	+0.5
4,328,725	-	PFLU_RS19140	0.59	-0.9
4,328,725	-	PFLU_RS19140	0.59	-0.4
4,328,725	-	PFLU_RS19140	0.59	+0.4
4,328,725	-	PFLU_RS19140	0.59	+1.2
4,328,725	-	PFLU_RS19140	0.59	-0.3
4,328,725	-	PFLU_RS19140	0.59	+0.2
4,328,725	-	PFLU_RS19140	0.59	+0.1
4,328,725	-	PFLU_RS19140	0.59	+0.4
4,328,725	-	PFLU_RS19140	0.59	-1.1
4,328,725	-	PFLU_RS19140	0.59	-0.2
4,328,725	-	PFLU_RS19140	0.59	+0.8
4,328,725	-	PFLU_RS19140	0.59	-0.5
4,328,743	+	PFLU_RS19140	0.60	-0.4
4,328,828	-	PFLU_RS19140	0.67	-0.7
4,328,875	+	PFLU_RS19140	0.71	+0.4
4,328,875	+	PFLU_RS19140	0.71	-0.4
4,328,875	+	PFLU_RS19140	0.71	+0.8
4,328,875	+	PFLU_RS19140	0.71	+0.3

Or see this region's nucleotide sequence