Strain Fitness in Pseudomonas simiae WCS417 around PS417_02590

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02585 and PS417_02590 are separated by 96 nucleotidesPS417_02590 and PS417_02595 are separated by 118 nucleotides PS417_02585: PS417_02585 - DNA helicase, at 587,827 to 589,224 _02585 PS417_02590: PS417_02590 - hypothetical protein, at 589,321 to 591,624 _02590 PS417_02595: PS417_02595 - NAD synthetase, at 591,743 to 592,675 _02595 Position (kb) 589 590 591 592Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 589.201 kb on + strandat 589.201 kb on + strandat 589.276 kb on + strandat 589.276 kb on + strandat 589.277 kb on - strandat 589.277 kb on - strandat 589.278 kb on + strandat 589.278 kb on + strandat 589.340 kb on + strandat 589.357 kb on + strandat 589.357 kb on + strandat 589.357 kb on + strandat 589.358 kb on - strandat 589.465 kb on + strandat 589.465 kb on + strandat 589.682 kb on - strand, within PS417_02590at 589.682 kb on - strand, within PS417_02590at 589.733 kb on - strandat 589.775 kb on + strand, within PS417_02590at 589.823 kb on - strand, within PS417_02590at 589.990 kb on - strand, within PS417_02590at 590.236 kb on + strand, within PS417_02590at 590.368 kb on + strand, within PS417_02590at 590.368 kb on + strand, within PS417_02590at 590.369 kb on - strand, within PS417_02590at 590.410 kb on + strand, within PS417_02590at 590.434 kb on + strand, within PS417_02590at 590.434 kb on + strandat 590.636 kb on - strand, within PS417_02590at 590.837 kb on - strand, within PS417_02590at 590.837 kb on - strand, within PS417_02590at 590.837 kb on - strand, within PS417_02590at 590.944 kb on + strand, within PS417_02590at 590.945 kb on - strand, within PS417_02590at 590.945 kb on - strand, within PS417_02590at 590.945 kb on - strand, within PS417_02590at 590.945 kb on - strand, within PS417_02590at 590.974 kb on + strand, within PS417_02590at 590.974 kb on + strand, within PS417_02590at 590.975 kb on - strand, within PS417_02590at 591.002 kb on - strand, within PS417_02590at 591.013 kb on + strand, within PS417_02590at 591.013 kb on + strand, within PS417_02590at 591.013 kb on + strand, within PS417_02590at 591.014 kb on - strand, within PS417_02590at 591.148 kb on + strand, within PS417_02590at 591.148 kb on + strand, within PS417_02590at 591.184 kb on + strand, within PS417_02590at 591.185 kb on - strand, within PS417_02590at 591.373 kb on + strand, within PS417_02590at 591.374 kb on - strand, within PS417_02590at 591.374 kb on - strand, within PS417_02590at 591.642 kb on - strandat 591.742 kb on + strandat 591.742 kb on + strandat 591.742 kb on + strandat 591.742 kb on + strandat 591.743 kb on - strandat 591.743 kb on - strandat 591.887 kb on + strand, within PS417_02595at 591.887 kb on + strand, within PS417_02595at 591.888 kb on - strand, within PS417_02595at 591.888 kb on - strand, within PS417_02595at 591.984 kb on - strand, within PS417_02595at 592.169 kb on - strand, within PS417_02595at 592.219 kb on + strand, within PS417_02595at 592.219 kb on + strand, within PS417_02595at 592.219 kb on + strand, within PS417_02595at 592.220 kb on - strand, within PS417_02595at 592.220 kb on - strand, within PS417_02595at 592.223 kb on + strand, within PS417_02595at 592.223 kb on + strand, within PS417_02595at 592.224 kb on - strand, within PS417_02595at 592.224 kb on - strand, within PS417_02595at 592.224 kb on - strand, within PS417_02595at 592.277 kb on + strand, within PS417_02595at 592.295 kb on - strand, within PS417_02595at 592.454 kb on - strand, within PS417_02595at 592.486 kb on - strand, within PS417_02595at 592.609 kb on + strandat 592.609 kb on + strandat 592.610 kb on - strandat 592.610 kb on - strandat 592.610 kb on - strandat 592.623 kb on + strandat 592.624 kb on - strandat 592.624 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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589,201 + -1.1
589,201 + +0.2
589,276 + +0.3
589,276 + +0.6
589,277 - -2.3
589,277 - -3.9
589,278 + -0.2
589,278 + +0.0
589,340 + -0.5
589,357 + -0.3
589,357 + +0.9
589,357 + -0.1
589,358 - -2.0
589,465 + -1.8
589,465 + -0.5
589,682 - PS417_02590 0.16 -1.2
589,682 - PS417_02590 0.16 -1.8
589,733 - +1.8
589,775 + PS417_02590 0.20 -2.1
589,823 - PS417_02590 0.22 -1.5
589,990 - PS417_02590 0.29 -1.2
590,236 + PS417_02590 0.40 +0.2
590,368 + PS417_02590 0.45 -0.4
590,368 + PS417_02590 0.45 -1.3
590,369 - PS417_02590 0.45 -0.6
590,410 + PS417_02590 0.47 -1.5
590,434 + PS417_02590 0.48 -0.3
590,434 + +0.9
590,636 - PS417_02590 0.57 -0.9
590,837 - PS417_02590 0.66 +0.9
590,837 - PS417_02590 0.66 +0.3
590,837 - PS417_02590 0.66 -0.4
590,944 + PS417_02590 0.70 +0.6
590,945 - PS417_02590 0.70 -0.3
590,945 - PS417_02590 0.70 -0.3
590,945 - PS417_02590 0.70 +1.1
590,945 - PS417_02590 0.70 -0.3
590,974 + PS417_02590 0.72 -0.7
590,974 + PS417_02590 0.72 -0.0
590,975 - PS417_02590 0.72 +0.1
591,002 - PS417_02590 0.73 -2.4
591,013 + PS417_02590 0.73 +0.6
591,013 + PS417_02590 0.73 +0.3
591,013 + PS417_02590 0.73 -0.9
591,014 - PS417_02590 0.73 -0.1
591,148 + PS417_02590 0.79 +1.2
591,148 + PS417_02590 0.79 -0.2
591,184 + PS417_02590 0.81 +0.5
591,185 - PS417_02590 0.81 +0.7
591,373 + PS417_02590 0.89 +0.3
591,374 - PS417_02590 0.89 +0.8
591,374 - PS417_02590 0.89 -0.9
591,642 - -0.2
591,742 + -0.1
591,742 + +0.3
591,742 + +0.6
591,742 + +0.2
591,743 - +1.2
591,743 - +1.9
591,887 + PS417_02595 0.15 -1.2
591,887 + PS417_02595 0.15 +0.3
591,888 - PS417_02595 0.16 -0.4
591,888 - PS417_02595 0.16 -0.2
591,984 - PS417_02595 0.26 -0.4
592,169 - PS417_02595 0.46 +0.4
592,219 + PS417_02595 0.51 -0.1
592,219 + PS417_02595 0.51 -0.2
592,219 + PS417_02595 0.51 -2.1
592,220 - PS417_02595 0.51 -0.3
592,220 - PS417_02595 0.51 -1.1
592,223 + PS417_02595 0.51 +1.3
592,223 + PS417_02595 0.51 -0.3
592,224 - PS417_02595 0.52 -0.2
592,224 - PS417_02595 0.52 +0.3
592,224 - PS417_02595 0.52 +0.5
592,277 + PS417_02595 0.57 +0.2
592,295 - PS417_02595 0.59 +0.8
592,454 - PS417_02595 0.76 -1.2
592,486 - PS417_02595 0.80 -0.3
592,609 + +0.3
592,609 + +0.9
592,610 - +0.2
592,610 - +0.2
592,610 - -1.5
592,623 + +0.5
592,624 - -1.8
592,624 - +0.5

Or see this region's nucleotide sequence