Strain Fitness in Pseudomonas simiae WCS417 around PS417_19125

Experiment: outer cut, LB soft agar motility assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_19105 and PS417_19110 are separated by 82 nucleotidesPS417_19110 and PS417_19115 are separated by 90 nucleotidesPS417_19115 and PS417_19120 overlap by 9 nucleotidesPS417_19120 and PS417_19125 are separated by 60 nucleotidesPS417_19125 and PS417_19130 are separated by 101 nucleotides PS417_19105: PS417_19105 - hypothetical protein, at 4,129,476 to 4,129,697 _19105 PS417_19110: PS417_19110 - hypothetical protein, at 4,129,780 to 4,130,079 _19110 PS417_19115: PS417_19115 - hypothetical protein, at 4,130,170 to 4,130,520 _19115 PS417_19120: PS417_19120 - tRNA-Asn, at 4,130,512 to 4,130,587 _19120 PS417_19125: PS417_19125 - LysR family transcriptional regulator, at 4,130,648 to 4,131,544 _19125 PS417_19130: PS417_19130 - L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) (from data), at 4,131,646 to 4,132,776 _19130 Position (kb) 4130 4131 4132Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4129.672 kb on + strandat 4129.672 kb on + strand, within PS417_19105at 4129.672 kb on + strand, within PS417_19105at 4129.673 kb on - strand, within PS417_19105at 4129.673 kb on - strand, within PS417_19105at 4129.695 kb on + strandat 4129.695 kb on + strandat 4129.832 kb on - strand, within PS417_19110at 4129.832 kb on - strand, within PS417_19110at 4129.848 kb on + strand, within PS417_19110at 4129.848 kb on + strand, within PS417_19110at 4129.849 kb on - strand, within PS417_19110at 4129.852 kb on + strand, within PS417_19110at 4129.852 kb on + strand, within PS417_19110at 4129.925 kb on + strand, within PS417_19110at 4129.926 kb on - strand, within PS417_19110at 4129.926 kb on - strand, within PS417_19110at 4129.959 kb on + strand, within PS417_19110at 4129.959 kb on + strand, within PS417_19110at 4130.001 kb on + strand, within PS417_19110at 4130.001 kb on + strand, within PS417_19110at 4130.014 kb on + strand, within PS417_19110at 4130.157 kb on + strandat 4130.158 kb on - strandat 4130.158 kb on - strandat 4130.158 kb on - strandat 4130.158 kb on - strandat 4130.161 kb on + strandat 4130.161 kb on + strandat 4130.162 kb on - strandat 4130.162 kb on - strandat 4130.206 kb on - strand, within PS417_19115at 4130.206 kb on - strand, within PS417_19115at 4130.206 kb on - strand, within PS417_19115at 4130.211 kb on + strand, within PS417_19115at 4130.211 kb on + strand, within PS417_19115at 4130.211 kb on + strand, within PS417_19115at 4130.211 kb on + strand, within PS417_19115at 4130.211 kb on + strand, within PS417_19115at 4130.211 kb on + strand, within PS417_19115at 4130.212 kb on - strand, within PS417_19115at 4130.212 kb on - strandat 4130.212 kb on - strand, within PS417_19115at 4130.212 kb on - strand, within PS417_19115at 4130.212 kb on - strand, within PS417_19115at 4130.212 kb on - strand, within PS417_19115at 4130.213 kb on + strand, within PS417_19115at 4130.214 kb on - strand, within PS417_19115at 4130.214 kb on - strand, within PS417_19115at 4130.214 kb on - strand, within PS417_19115at 4130.342 kb on - strand, within PS417_19115at 4130.551 kb on + strand, within PS417_19120at 4130.811 kb on + strand, within PS417_19125at 4131.013 kb on + strand, within PS417_19125at 4131.014 kb on - strand, within PS417_19125at 4131.207 kb on + strand, within PS417_19125at 4131.207 kb on + strand, within PS417_19125at 4131.644 kb on + strandat 4131.644 kb on + strandat 4131.652 kb on - strandat 4131.652 kb on - strandat 4131.652 kb on - strandat 4131.895 kb on + strand, within PS417_19130at 4131.895 kb on + strand, within PS417_19130at 4131.895 kb on + strand, within PS417_19130at 4131.895 kb on + strand, within PS417_19130at 4131.896 kb on - strand, within PS417_19130at 4131.896 kb on - strand, within PS417_19130at 4131.896 kb on - strand, within PS417_19130at 4131.896 kb on - strand, within PS417_19130at 4131.896 kb on - strand, within PS417_19130at 4131.896 kb on - strand, within PS417_19130at 4132.030 kb on + strand, within PS417_19130at 4132.030 kb on + strand, within PS417_19130at 4132.030 kb on + strand, within PS417_19130at 4132.030 kb on + strand, within PS417_19130at 4132.031 kb on - strand, within PS417_19130at 4132.031 kb on - strand, within PS417_19130at 4132.031 kb on - strand, within PS417_19130at 4132.104 kb on - strand, within PS417_19130at 4132.104 kb on - strand, within PS417_19130at 4132.107 kb on + strand, within PS417_19130at 4132.263 kb on + strand, within PS417_19130at 4132.264 kb on - strand, within PS417_19130at 4132.303 kb on + strand, within PS417_19130at 4132.304 kb on - strand, within PS417_19130at 4132.304 kb on - strand, within PS417_19130at 4132.402 kb on - strand, within PS417_19130

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
remove
4,129,672 + -1.1
4,129,672 + PS417_19105 0.88 +0.4
4,129,672 + PS417_19105 0.88 -1.1
4,129,673 - PS417_19105 0.89 +0.5
4,129,673 - PS417_19105 0.89 +0.4
4,129,695 + +0.7
4,129,695 + +0.7
4,129,832 - PS417_19110 0.17 -0.4
4,129,832 - PS417_19110 0.17 -1.4
4,129,848 + PS417_19110 0.23 -1.4
4,129,848 + PS417_19110 0.23 -0.4
4,129,849 - PS417_19110 0.23 +0.7
4,129,852 + PS417_19110 0.24 +0.0
4,129,852 + PS417_19110 0.24 +0.8
4,129,925 + PS417_19110 0.48 -1.0
4,129,926 - PS417_19110 0.49 -0.8
4,129,926 - PS417_19110 0.49 +0.6
4,129,959 + PS417_19110 0.60 +1.3
4,129,959 + PS417_19110 0.60 -0.4
4,130,001 + PS417_19110 0.74 +0.1
4,130,001 + PS417_19110 0.74 -1.6
4,130,014 + PS417_19110 0.78 +0.3
4,130,157 + -0.0
4,130,158 - -0.7
4,130,158 - +0.3
4,130,158 - -0.5
4,130,158 - -0.7
4,130,161 + +0.2
4,130,161 + +0.4
4,130,162 - -0.7
4,130,162 - +0.8
4,130,206 - PS417_19115 0.10 +0.9
4,130,206 - PS417_19115 0.10 +2.3
4,130,206 - PS417_19115 0.10 -0.8
4,130,211 + PS417_19115 0.12 -0.7
4,130,211 + PS417_19115 0.12 +0.7
4,130,211 + PS417_19115 0.12 -0.4
4,130,211 + PS417_19115 0.12 +0.2
4,130,211 + PS417_19115 0.12 +0.1
4,130,211 + PS417_19115 0.12 +1.6
4,130,212 - PS417_19115 0.12 -1.1
4,130,212 - +3.0
4,130,212 - PS417_19115 0.12 -0.5
4,130,212 - PS417_19115 0.12 -0.1
4,130,212 - PS417_19115 0.12 +1.5
4,130,212 - PS417_19115 0.12 -1.4
4,130,213 + PS417_19115 0.12 -0.7
4,130,214 - PS417_19115 0.13 +0.2
4,130,214 - PS417_19115 0.13 +0.2
4,130,214 - PS417_19115 0.13 -1.3
4,130,342 - PS417_19115 0.49 -1.2
4,130,551 + PS417_19120 0.51 +0.3
4,130,811 + PS417_19125 0.18 -1.9
4,131,013 + PS417_19125 0.41 -2.1
4,131,014 - PS417_19125 0.41 +0.7
4,131,207 + PS417_19125 0.62 +1.3
4,131,207 + PS417_19125 0.62 +2.1
4,131,644 + +0.5
4,131,644 + -1.0
4,131,652 - +1.3
4,131,652 - -0.4
4,131,652 - -3.3
4,131,895 + PS417_19130 0.22 -0.3
4,131,895 + PS417_19130 0.22 -1.4
4,131,895 + PS417_19130 0.22 -0.7
4,131,895 + PS417_19130 0.22 -0.3
4,131,896 - PS417_19130 0.22 +0.3
4,131,896 - PS417_19130 0.22 -2.1
4,131,896 - PS417_19130 0.22 +0.1
4,131,896 - PS417_19130 0.22 -0.0
4,131,896 - PS417_19130 0.22 +0.2
4,131,896 - PS417_19130 0.22 -0.1
4,132,030 + PS417_19130 0.34 +0.1
4,132,030 + PS417_19130 0.34 -0.1
4,132,030 + PS417_19130 0.34 -0.7
4,132,030 + PS417_19130 0.34 +1.8
4,132,031 - PS417_19130 0.34 -0.7
4,132,031 - PS417_19130 0.34 -0.4
4,132,031 - PS417_19130 0.34 +0.2
4,132,104 - PS417_19130 0.40 +0.3
4,132,104 - PS417_19130 0.40 -0.6
4,132,107 + PS417_19130 0.41 +0.1
4,132,263 + PS417_19130 0.55 -0.5
4,132,264 - PS417_19130 0.55 +0.6
4,132,303 + PS417_19130 0.58 -0.1
4,132,304 - PS417_19130 0.58 -1.4
4,132,304 - PS417_19130 0.58 -0.1
4,132,402 - PS417_19130 0.67 -1.7

Or see this region's nucleotide sequence