Strain Fitness in Pseudomonas simiae WCS417 around PS417_08870

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08865 and PS417_08870 are separated by 303 nucleotidesPS417_08870 and PS417_08875 are separated by 364 nucleotidesPS417_08875 and PS417_08880 overlap by 7 nucleotides PS417_08865: PS417_08865 - large component of pyruvate transporter (actP-like) (from data), at 1,927,538 to 1,929,196 _08865 PS417_08870: PS417_08870 - type II citrate synthase, at 1,929,500 to 1,930,789 _08870 PS417_08875: PS417_08875 - succinate dehydrogenase, at 1,931,154 to 1,931,528 _08875 PS417_08880: PS417_08880 - succinate dehydrogenase, at 1,931,522 to 1,931,890 _08880 Position (kb) 1929 1930 1931Strain fitness (log2 ratio) -1 0 1 2at 1928.873 kb on - strandat 1928.900 kb on + strand, within PS417_08865at 1928.901 kb on - strandat 1929.257 kb on - strandat 1929.387 kb on + strandat 1929.451 kb on + strandat 1929.473 kb on - strandat 1930.804 kb on - strandat 1930.853 kb on - strandat 1930.859 kb on - strandat 1930.861 kb on - strandat 1930.969 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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1,928,873 - -0.1
1,928,900 + PS417_08865 0.82 -1.1
1,928,901 - -1.1
1,929,257 - +0.2
1,929,387 + +0.6
1,929,451 + -0.5
1,929,473 - +1.5
1,930,804 - -1.1
1,930,853 - -1.1
1,930,859 - -0.4
1,930,861 - +1.9
1,930,969 + -0.7

Or see this region's nucleotide sequence