Strain Fitness in Pseudomonas simiae WCS417 around PS417_00615

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00605 and PS417_00610 overlap by 4 nucleotidesPS417_00610 and PS417_00615 overlap by 4 nucleotidesPS417_00615 and PS417_00620 are separated by 330 nucleotides PS417_00605: PS417_00605 - peptide transporter, at 121,763 to 125,140 _00605 PS417_00610: PS417_00610 - aminobenzoate oxygenase, at 125,137 to 126,084 _00610 PS417_00615: PS417_00615 - hypothetical protein, at 126,081 to 126,839 _00615 PS417_00620: PS417_00620 - GntR family transcriptional regulator, at 127,170 to 127,880 _00620 Position (kb) 126 127Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 125.165 kb on + strandat 125.165 kb on + strandat 125.166 kb on - strandat 125.262 kb on + strand, within PS417_00610at 125.306 kb on - strand, within PS417_00610at 125.444 kb on + strand, within PS417_00610at 125.617 kb on + strand, within PS417_00610at 125.617 kb on + strand, within PS417_00610at 125.618 kb on - strand, within PS417_00610at 125.695 kb on + strand, within PS417_00610at 125.695 kb on + strand, within PS417_00610at 125.695 kb on + strand, within PS417_00610at 125.750 kb on + strand, within PS417_00610at 125.891 kb on + strand, within PS417_00610at 125.908 kb on + strand, within PS417_00610at 125.908 kb on + strand, within PS417_00610at 125.981 kb on + strand, within PS417_00610at 125.982 kb on - strand, within PS417_00610at 126.068 kb on + strandat 126.182 kb on + strand, within PS417_00615at 126.182 kb on + strand, within PS417_00615at 126.182 kb on + strand, within PS417_00615at 126.183 kb on - strand, within PS417_00615at 126.183 kb on - strand, within PS417_00615at 126.183 kb on - strand, within PS417_00615at 126.210 kb on + strand, within PS417_00615at 126.210 kb on + strand, within PS417_00615at 126.211 kb on - strand, within PS417_00615at 126.211 kb on - strand, within PS417_00615at 126.281 kb on + strand, within PS417_00615at 126.575 kb on - strand, within PS417_00615at 126.952 kb on + strandat 126.952 kb on + strandat 126.952 kb on + strandat 127.063 kb on + strandat 127.064 kb on - strandat 127.112 kb on + strandat 127.137 kb on + strandat 127.167 kb on - strandat 127.432 kb on + strand, within PS417_00620at 127.433 kb on - strand, within PS417_00620at 127.478 kb on - strand, within PS417_00620at 127.506 kb on - strand, within PS417_00620at 127.506 kb on - strand, within PS417_00620at 127.506 kb on - strand, within PS417_00620at 127.594 kb on + strand, within PS417_00620at 127.595 kb on - strand, within PS417_00620at 127.833 kb on - strandat 127.833 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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125,165 + -0.6
125,165 + +0.3
125,166 - -0.5
125,262 + PS417_00610 0.13 -0.3
125,306 - PS417_00610 0.18 +0.9
125,444 + PS417_00610 0.32 -0.4
125,617 + PS417_00610 0.51 -0.0
125,617 + PS417_00610 0.51 +1.2
125,618 - PS417_00610 0.51 -3.3
125,695 + PS417_00610 0.59 +0.7
125,695 + PS417_00610 0.59 -2.0
125,695 + PS417_00610 0.59 +0.2
125,750 + PS417_00610 0.65 +0.8
125,891 + PS417_00610 0.80 +1.4
125,908 + PS417_00610 0.81 -3.3
125,908 + PS417_00610 0.81 +0.6
125,981 + PS417_00610 0.89 -0.8
125,982 - PS417_00610 0.89 +0.2
126,068 + -0.8
126,182 + PS417_00615 0.13 -0.6
126,182 + PS417_00615 0.13 +2.2
126,182 + PS417_00615 0.13 -0.1
126,183 - PS417_00615 0.13 -1.2
126,183 - PS417_00615 0.13 +0.2
126,183 - PS417_00615 0.13 -0.0
126,210 + PS417_00615 0.17 +1.7
126,210 + PS417_00615 0.17 -0.6
126,211 - PS417_00615 0.17 +0.2
126,211 - PS417_00615 0.17 +0.6
126,281 + PS417_00615 0.26 +0.1
126,575 - PS417_00615 0.65 +1.2
126,952 + +0.8
126,952 + -0.6
126,952 + -0.9
127,063 + -0.9
127,064 - -0.6
127,112 + +0.4
127,137 + +0.0
127,167 - +0.4
127,432 + PS417_00620 0.37 +0.5
127,433 - PS417_00620 0.37 -1.1
127,478 - PS417_00620 0.43 +0.4
127,506 - PS417_00620 0.47 -1.5
127,506 - PS417_00620 0.47 -0.3
127,506 - PS417_00620 0.47 +0.1
127,594 + PS417_00620 0.60 +0.6
127,595 - PS417_00620 0.60 +0.1
127,833 - +1.1
127,833 - +1.1

Or see this region's nucleotide sequence