Experiment: Plant outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29110 and ABID97_RS29115 are separated by 13 nucleotides ABID97_RS29115 and ABID97_RS29120 are separated by 109 nucleotides
ABID97_RS29110: ABID97_RS29110 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 740,906 to 743,155
_RS29110
ABID97_RS29115: ABID97_RS29115 - (2Fe-2S)-binding protein, at 743,169 to 743,642
_RS29115
ABID97_RS29120: ABID97_RS29120 - LysR substrate-binding domain-containing protein, at 743,752 to 744,648
_RS29120
Position (kb) 743
744 Strain fitness (log2 ratio) -1
0
1 at 742.255 kb on - strand, within ABID97_RS29110 at 742.255 kb on - strand, within ABID97_RS29110 at 742.701 kb on + strand, within ABID97_RS29110 at 742.770 kb on + strand, within ABID97_RS29110 at 743.219 kb on - strand, within ABID97_RS29115 at 743.219 kb on - strand, within ABID97_RS29115 at 743.975 kb on + strand, within ABID97_RS29120 at 744.272 kb on - strand, within ABID97_RS29120 at 744.361 kb on + strand, within ABID97_RS29120 at 744.361 kb on + strand, within ABID97_RS29120 at 744.361 kb on + strand, within ABID97_RS29120 at 744.362 kb on - strand, within ABID97_RS29120 at 744.401 kb on - strand, within ABID97_RS29120 at 744.478 kb on + strand, within ABID97_RS29120 at 744.574 kb on + strand at 744.574 kb on + strand at 744.575 kb on - strand at 744.575 kb on - strand at 744.575 kb on - strand at 744.625 kb on + strand at 744.626 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant outgrowth control remove 742,255 - ABID97_RS29110 0.60 -0.1 742,255 - ABID97_RS29110 0.60 +0.3 742,701 + ABID97_RS29110 0.80 +0.7 742,770 + ABID97_RS29110 0.83 +0.0 743,219 - ABID97_RS29115 0.11 +0.0 743,219 - ABID97_RS29115 0.11 +1.4 743,975 + ABID97_RS29120 0.25 -0.1 744,272 - ABID97_RS29120 0.58 -0.0 744,361 + ABID97_RS29120 0.68 +0.2 744,361 + ABID97_RS29120 0.68 -0.1 744,361 + ABID97_RS29120 0.68 -0.3 744,362 - ABID97_RS29120 0.68 +0.9 744,401 - ABID97_RS29120 0.72 -1.5 744,478 + ABID97_RS29120 0.81 -0.2 744,574 + -0.0 744,574 + -0.3 744,575 - +0.3 744,575 - -0.2 744,575 - +0.2 744,625 + +0.1 744,626 - +0.4
Or see this region's nucleotide sequence