Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27840

Experiment: Plant outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27835 and ABID97_RS27840 are separated by 16 nucleotidesABID97_RS27840 and ABID97_RS27845 are separated by 340 nucleotides ABID97_RS27835: ABID97_RS27835 - acetyl-CoA C-acyltransferase, at 487,345 to 488,529 _RS27835 ABID97_RS27840: ABID97_RS27840 - acyl-CoA dehydrogenase C-terminal domain-containing protein, at 488,546 to 490,324 _RS27840 ABID97_RS27845: ABID97_RS27845 - fatty acid desaturase, at 490,665 to 491,687 _RS27845 Position (kb) 488 489 490 491Strain fitness (log2 ratio) -2 -1 0 1at 487.783 kb on + strand, within ABID97_RS27835at 487.784 kb on - strand, within ABID97_RS27835at 487.986 kb on + strand, within ABID97_RS27835at 488.946 kb on - strand, within ABID97_RS27840at 490.106 kb on + strand, within ABID97_RS27840at 490.496 kb on - strandat 491.196 kb on + strand, within ABID97_RS27845

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant outgrowth control
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487,783 + ABID97_RS27835 0.37 -0.1
487,784 - ABID97_RS27835 0.37 +0.1
487,986 + ABID97_RS27835 0.54 -2.1
488,946 - ABID97_RS27840 0.22 -0.1
490,106 + ABID97_RS27840 0.88 +0.9
490,496 - -1.9
491,196 + ABID97_RS27845 0.52 +0.1

Or see this region's nucleotide sequence