Experiment: Plant outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25560 and ABID97_RS25565 are separated by 43 nucleotides ABID97_RS25565 and ABID97_RS25570 overlap by 12 nucleotides ABID97_RS25570 and ABID97_RS25575 are separated by 110 nucleotides ABID97_RS25575 and ABID97_RS25580 overlap by 38 nucleotides
ABID97_RS25560: ABID97_RS25560 - alpha/beta hydrolase, at 32,075 to 33,010
_RS25560
ABID97_RS25565: ABID97_RS25565 - NADP-dependent oxidoreductase, at 33,054 to 33,998
_RS25565
ABID97_RS25570: ABID97_RS25570 - alkene reductase, at 33,987 to 35,048
_RS25570
ABID97_RS25575: ABID97_RS25575 - LysR family transcriptional regulator, at 35,159 to 36,034
_RS25575
ABID97_RS25580: ABID97_RS25580 - nucleotidyltransferase family protein, at 35,997 to 36,596
_RS25580
Position (kb) 33
34
35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 33.055 kb on + strand at 33.347 kb on - strand, within ABID97_RS25565 at 33.437 kb on - strand, within ABID97_RS25565 at 33.688 kb on + strand, within ABID97_RS25565 at 33.689 kb on - strand, within ABID97_RS25565 at 34.036 kb on + strand at 34.271 kb on - strand, within ABID97_RS25570 at 34.307 kb on - strand, within ABID97_RS25570 at 34.312 kb on + strand, within ABID97_RS25570 at 34.831 kb on + strand, within ABID97_RS25570 at 34.832 kb on - strand, within ABID97_RS25570 at 34.853 kb on - strand, within ABID97_RS25570 at 34.922 kb on - strand, within ABID97_RS25570 at 34.924 kb on + strand, within ABID97_RS25570 at 34.924 kb on + strand, within ABID97_RS25570 at 34.925 kb on - strand, within ABID97_RS25570 at 35.012 kb on - strand at 35.112 kb on + strand at 35.166 kb on - strand at 35.166 kb on - strand at 35.166 kb on - strand at 35.166 kb on - strand at 35.166 kb on - strand at 35.352 kb on - strand, within ABID97_RS25575 at 35.354 kb on + strand, within ABID97_RS25575 at 35.474 kb on + strand, within ABID97_RS25575 at 35.474 kb on + strand, within ABID97_RS25575 at 35.475 kb on - strand, within ABID97_RS25575 at 35.475 kb on - strand, within ABID97_RS25575 at 35.475 kb on - strand, within ABID97_RS25575 at 35.648 kb on + strand, within ABID97_RS25575 at 35.648 kb on + strand, within ABID97_RS25575 at 35.649 kb on - strand, within ABID97_RS25575 at 35.649 kb on - strand, within ABID97_RS25575 at 35.649 kb on - strand, within ABID97_RS25575 at 35.649 kb on - strand, within ABID97_RS25575 at 35.654 kb on + strand, within ABID97_RS25575 at 35.655 kb on - strand, within ABID97_RS25575 at 35.655 kb on - strand, within ABID97_RS25575 at 35.825 kb on + strand, within ABID97_RS25575 at 35.825 kb on + strand, within ABID97_RS25575 at 35.826 kb on - strand, within ABID97_RS25575 at 35.826 kb on - strand, within ABID97_RS25575 at 35.826 kb on - strand, within ABID97_RS25575
Per-strain Table
Position Strand Gene LocusTag Fraction Plant outgrowth control remove 33,055 + +0.4 33,347 - ABID97_RS25565 0.31 -0.6 33,437 - ABID97_RS25565 0.41 +0.1 33,688 + ABID97_RS25565 0.67 -0.1 33,689 - ABID97_RS25565 0.67 +0.1 34,036 + +0.0 34,271 - ABID97_RS25570 0.27 -0.9 34,307 - ABID97_RS25570 0.30 -2.9 34,312 + ABID97_RS25570 0.31 -0.2 34,831 + ABID97_RS25570 0.79 -0.4 34,832 - ABID97_RS25570 0.80 +0.1 34,853 - ABID97_RS25570 0.82 +0.1 34,922 - ABID97_RS25570 0.88 +0.0 34,924 + ABID97_RS25570 0.88 -1.2 34,924 + ABID97_RS25570 0.88 +0.3 34,925 - ABID97_RS25570 0.88 -1.0 35,012 - -0.3 35,112 + +0.0 35,166 - +0.4 35,166 - +0.1 35,166 - +0.8 35,166 - +0.0 35,166 - +1.1 35,352 - ABID97_RS25575 0.22 -0.6 35,354 + ABID97_RS25575 0.22 -0.5 35,474 + ABID97_RS25575 0.36 +0.7 35,474 + ABID97_RS25575 0.36 +1.1 35,475 - ABID97_RS25575 0.36 -0.0 35,475 - ABID97_RS25575 0.36 +1.5 35,475 - ABID97_RS25575 0.36 +0.2 35,648 + ABID97_RS25575 0.56 +0.0 35,648 + ABID97_RS25575 0.56 -0.1 35,649 - ABID97_RS25575 0.56 -0.3 35,649 - ABID97_RS25575 0.56 -0.3 35,649 - ABID97_RS25575 0.56 -0.1 35,649 - ABID97_RS25575 0.56 -0.4 35,654 + ABID97_RS25575 0.57 -0.0 35,655 - ABID97_RS25575 0.57 -0.7 35,655 - ABID97_RS25575 0.57 +0.1 35,825 + ABID97_RS25575 0.76 +0.4 35,825 + ABID97_RS25575 0.76 +0.0 35,826 - ABID97_RS25575 0.76 +0.0 35,826 - ABID97_RS25575 0.76 +0.6 35,826 - ABID97_RS25575 0.76 +1.1
Or see this region's nucleotide sequence