Strain Fitness in Variovorax sp. OAS795 around ABID97_RS24705

Experiment: Plant outgrowth control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS24690 and ABID97_RS24695 are separated by 42 nucleotidesABID97_RS24695 and ABID97_RS24700 are separated by 19 nucleotidesABID97_RS24700 and ABID97_RS24705 overlap by 1 nucleotidesABID97_RS24705 and ABID97_RS24710 are separated by 81 nucleotidesABID97_RS24710 and ABID97_RS24715 are separated by 111 nucleotides ABID97_RS24690: ABID97_RS24690 - methyl-accepting chemotaxis protein, at 5,119,115 to 5,121,430 _RS24690 ABID97_RS24695: ABID97_RS24695 - chemotaxis protein CheW, at 5,121,473 to 5,122,006 _RS24695 ABID97_RS24700: ABID97_RS24700 - response regulator, at 5,122,026 to 5,122,391 _RS24700 ABID97_RS24705: ABID97_RS24705 - response regulator, at 5,122,391 to 5,122,789 _RS24705 ABID97_RS24710: ABID97_RS24710 - rubredoxin, at 5,122,871 to 5,123,041 _RS24710 ABID97_RS24715: ABID97_RS24715 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 5,123,153 to 5,124,116 _RS24715 Position (kb) 5122 5123Strain fitness (log2 ratio) -2 -1 0 1 2at 5121.398 kb on + strandat 5121.398 kb on + strandat 5121.399 kb on - strandat 5121.399 kb on - strandat 5121.450 kb on + strandat 5121.451 kb on - strandat 5121.451 kb on - strandat 5121.474 kb on + strandat 5121.474 kb on + strandat 5121.488 kb on + strandat 5121.489 kb on - strandat 5121.558 kb on + strand, within ABID97_RS24695at 5121.558 kb on + strand, within ABID97_RS24695at 5121.558 kb on + strand, within ABID97_RS24695at 5121.559 kb on - strand, within ABID97_RS24695at 5121.559 kb on - strand, within ABID97_RS24695at 5121.559 kb on - strand, within ABID97_RS24695at 5121.559 kb on - strand, within ABID97_RS24695at 5121.559 kb on - strand, within ABID97_RS24695at 5121.559 kb on - strand, within ABID97_RS24695at 5121.778 kb on - strand, within ABID97_RS24695at 5121.825 kb on + strand, within ABID97_RS24695at 5121.826 kb on - strand, within ABID97_RS24695at 5121.888 kb on + strand, within ABID97_RS24695at 5121.889 kb on - strand, within ABID97_RS24695at 5121.889 kb on - strand, within ABID97_RS24695at 5122.084 kb on + strand, within ABID97_RS24700at 5122.085 kb on - strand, within ABID97_RS24700at 5122.085 kb on - strand, within ABID97_RS24700at 5122.168 kb on + strand, within ABID97_RS24700at 5122.168 kb on + strand, within ABID97_RS24700at 5122.169 kb on - strand, within ABID97_RS24700at 5122.392 kb on + strandat 5122.393 kb on - strandat 5122.470 kb on + strand, within ABID97_RS24705at 5122.471 kb on - strand, within ABID97_RS24705at 5122.715 kb on + strand, within ABID97_RS24705at 5122.738 kb on + strand, within ABID97_RS24705at 5122.739 kb on - strand, within ABID97_RS24705at 5122.739 kb on - strand, within ABID97_RS24705at 5122.767 kb on + strandat 5122.767 kb on + strandat 5122.767 kb on + strandat 5122.767 kb on + strandat 5122.768 kb on - strandat 5122.768 kb on - strandat 5122.834 kb on + strandat 5122.836 kb on - strandat 5122.836 kb on - strandat 5122.836 kb on - strandat 5122.836 kb on - strandat 5122.836 kb on - strandat 5122.836 kb on - strandat 5123.066 kb on - strandat 5123.109 kb on - strandat 5123.152 kb on + strandat 5123.162 kb on + strandat 5123.163 kb on - strandat 5123.167 kb on - strandat 5123.167 kb on - strandat 5123.203 kb on + strandat 5123.204 kb on - strandat 5123.369 kb on + strand, within ABID97_RS24715at 5123.370 kb on - strand, within ABID97_RS24715at 5123.558 kb on + strand, within ABID97_RS24715at 5123.558 kb on + strand, within ABID97_RS24715at 5123.559 kb on - strand, within ABID97_RS24715at 5123.559 kb on - strand, within ABID97_RS24715at 5123.559 kb on - strand, within ABID97_RS24715at 5123.559 kb on - strand, within ABID97_RS24715at 5123.559 kb on - strand, within ABID97_RS24715at 5123.559 kb on - strand, within ABID97_RS24715at 5123.603 kb on + strand, within ABID97_RS24715at 5123.603 kb on + strand, within ABID97_RS24715at 5123.604 kb on - strand, within ABID97_RS24715at 5123.604 kb on - strand, within ABID97_RS24715at 5123.760 kb on - strand, within ABID97_RS24715

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant outgrowth control
remove
5,121,398 + -2.5
5,121,398 + +0.5
5,121,399 - -0.1
5,121,399 - +0.2
5,121,450 + +0.2
5,121,451 - +0.4
5,121,451 - +0.2
5,121,474 + -0.2
5,121,474 + +1.1
5,121,488 + +0.1
5,121,489 - +0.1
5,121,558 + ABID97_RS24695 0.16 +0.1
5,121,558 + ABID97_RS24695 0.16 +0.0
5,121,558 + ABID97_RS24695 0.16 -0.2
5,121,559 - ABID97_RS24695 0.16 -0.2
5,121,559 - ABID97_RS24695 0.16 +0.5
5,121,559 - ABID97_RS24695 0.16 +0.1
5,121,559 - ABID97_RS24695 0.16 -1.9
5,121,559 - ABID97_RS24695 0.16 -0.3
5,121,559 - ABID97_RS24695 0.16 +0.0
5,121,778 - ABID97_RS24695 0.57 +0.7
5,121,825 + ABID97_RS24695 0.66 -0.6
5,121,826 - ABID97_RS24695 0.66 +0.4
5,121,888 + ABID97_RS24695 0.78 -0.2
5,121,889 - ABID97_RS24695 0.78 +0.2
5,121,889 - ABID97_RS24695 0.78 -0.2
5,122,084 + ABID97_RS24700 0.16 -0.3
5,122,085 - ABID97_RS24700 0.16 +0.3
5,122,085 - ABID97_RS24700 0.16 +0.6
5,122,168 + ABID97_RS24700 0.39 +0.3
5,122,168 + ABID97_RS24700 0.39 -2.1
5,122,169 - ABID97_RS24700 0.39 -0.5
5,122,392 + -0.3
5,122,393 - -0.6
5,122,470 + ABID97_RS24705 0.20 -0.6
5,122,471 - ABID97_RS24705 0.20 +1.3
5,122,715 + ABID97_RS24705 0.81 -1.0
5,122,738 + ABID97_RS24705 0.87 +0.8
5,122,739 - ABID97_RS24705 0.87 -0.6
5,122,739 - ABID97_RS24705 0.87 -2.4
5,122,767 + -0.5
5,122,767 + +0.0
5,122,767 + +0.0
5,122,767 + -0.1
5,122,768 - +0.6
5,122,768 - -0.2
5,122,834 + +0.4
5,122,836 - +0.5
5,122,836 - -0.9
5,122,836 - -0.2
5,122,836 - +0.2
5,122,836 - -0.1
5,122,836 - -0.3
5,123,066 - -0.3
5,123,109 - +0.0
5,123,152 + +1.8
5,123,162 + +0.4
5,123,163 - +0.4
5,123,167 - -1.7
5,123,167 - +0.6
5,123,203 + -0.3
5,123,204 - -0.4
5,123,369 + ABID97_RS24715 0.22 -0.1
5,123,370 - ABID97_RS24715 0.23 -1.4
5,123,558 + ABID97_RS24715 0.42 -0.4
5,123,558 + ABID97_RS24715 0.42 +0.2
5,123,559 - ABID97_RS24715 0.42 +0.6
5,123,559 - ABID97_RS24715 0.42 +0.0
5,123,559 - ABID97_RS24715 0.42 -0.6
5,123,559 - ABID97_RS24715 0.42 -0.7
5,123,559 - ABID97_RS24715 0.42 -0.0
5,123,559 - ABID97_RS24715 0.42 +0.3
5,123,603 + ABID97_RS24715 0.47 -0.9
5,123,603 + ABID97_RS24715 0.47 +0.1
5,123,604 - ABID97_RS24715 0.47 -0.0
5,123,604 - ABID97_RS24715 0.47 -1.1
5,123,760 - ABID97_RS24715 0.63 -0.2

Or see this region's nucleotide sequence