Experiment: Plant outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24375 and ABID97_RS24380 are separated by 107 nucleotides ABID97_RS24380 and ABID97_RS24385 are separated by 11 nucleotides ABID97_RS24385 and ABID97_RS24390 are separated by 78 nucleotides ABID97_RS24390 and ABID97_RS24395 are separated by 161 nucleotides
ABID97_RS24375: ABID97_RS24375 - LysR substrate-binding domain-containing protein, at 5,045,199 to 5,046,194
_RS24375
ABID97_RS24380: ABID97_RS24380 - protocatechuate 3,4-dioxygenase subunit beta, at 5,046,302 to 5,047,027
_RS24380
ABID97_RS24385: ABID97_RS24385 - protocatechuate 3,4-dioxygenase subunit alpha, at 5,047,039 to 5,047,650
_RS24385
ABID97_RS24390: ABID97_RS24390 - c-type cytochrome, at 5,047,729 to 5,048,421
_RS24390
ABID97_RS24395: ABID97_RS24395 - AAA family ATPase, at 5,048,583 to 5,049,437
_RS24395
Position (kb) 5047
5048 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5046.253 kb on + strand at 5046.254 kb on - strand at 5046.368 kb on + strand at 5046.368 kb on + strand at 5046.368 kb on + strand at 5046.368 kb on + strand at 5046.368 kb on + strand at 5046.369 kb on - strand at 5046.369 kb on - strand at 5046.369 kb on - strand at 5046.369 kb on - strand at 5046.369 kb on - strand at 5046.465 kb on - strand, within ABID97_RS24380 at 5046.635 kb on + strand, within ABID97_RS24380 at 5046.636 kb on - strand, within ABID97_RS24380 at 5046.636 kb on - strand, within ABID97_RS24380 at 5046.752 kb on + strand, within ABID97_RS24380 at 5046.848 kb on + strand, within ABID97_RS24380 at 5046.848 kb on + strand, within ABID97_RS24380 at 5046.848 kb on + strand, within ABID97_RS24380 at 5046.848 kb on + strand, within ABID97_RS24380 at 5046.849 kb on - strand, within ABID97_RS24380 at 5046.849 kb on - strand, within ABID97_RS24380 at 5046.849 kb on - strand, within ABID97_RS24380 at 5046.849 kb on - strand, within ABID97_RS24380 at 5046.875 kb on + strand, within ABID97_RS24380 at 5046.875 kb on + strand, within ABID97_RS24380 at 5046.875 kb on + strand, within ABID97_RS24380 at 5046.875 kb on + strand, within ABID97_RS24380 at 5046.959 kb on + strand at 5046.960 kb on - strand at 5047.102 kb on + strand, within ABID97_RS24385 at 5047.103 kb on - strand, within ABID97_RS24385 at 5047.132 kb on + strand, within ABID97_RS24385 at 5047.133 kb on - strand, within ABID97_RS24385 at 5047.480 kb on + strand, within ABID97_RS24385 at 5047.481 kb on - strand, within ABID97_RS24385 at 5047.594 kb on + strand at 5047.595 kb on - strand at 5047.595 kb on - strand at 5047.595 kb on - strand at 5047.796 kb on + strand at 5047.796 kb on + strand at 5047.926 kb on - strand, within ABID97_RS24390 at 5048.108 kb on + strand, within ABID97_RS24390 at 5048.108 kb on + strand, within ABID97_RS24390 at 5048.108 kb on + strand, within ABID97_RS24390 at 5048.109 kb on - strand, within ABID97_RS24390 at 5048.109 kb on - strand, within ABID97_RS24390 at 5048.111 kb on + strand, within ABID97_RS24390 at 5048.111 kb on + strand, within ABID97_RS24390 at 5048.112 kb on - strand, within ABID97_RS24390 at 5048.112 kb on - strand, within ABID97_RS24390 at 5048.195 kb on + strand, within ABID97_RS24390 at 5048.195 kb on + strand, within ABID97_RS24390 at 5048.219 kb on + strand, within ABID97_RS24390 at 5048.219 kb on + strand, within ABID97_RS24390 at 5048.219 kb on + strand, within ABID97_RS24390 at 5048.446 kb on + strand at 5048.472 kb on + strand at 5048.472 kb on + strand at 5048.473 kb on - strand at 5048.474 kb on + strand at 5048.475 kb on - strand at 5048.475 kb on - strand at 5048.475 kb on - strand at 5048.607 kb on + strand at 5048.607 kb on + strand at 5048.607 kb on + strand at 5048.608 kb on - strand at 5048.608 kb on - strand at 5048.608 kb on - strand at 5048.608 kb on - strand at 5048.608 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant outgrowth control remove 5,046,253 + -1.7 5,046,254 - -1.3 5,046,368 + -1.1 5,046,368 + +0.1 5,046,368 + -0.9 5,046,368 + +0.5 5,046,368 + +0.3 5,046,369 - -1.0 5,046,369 - +0.5 5,046,369 - +0.1 5,046,369 - -0.5 5,046,369 - +0.2 5,046,465 - ABID97_RS24380 0.22 -0.1 5,046,635 + ABID97_RS24380 0.46 +0.5 5,046,636 - ABID97_RS24380 0.46 -1.1 5,046,636 - ABID97_RS24380 0.46 +0.3 5,046,752 + ABID97_RS24380 0.62 -0.1 5,046,848 + ABID97_RS24380 0.75 -0.0 5,046,848 + ABID97_RS24380 0.75 +1.8 5,046,848 + ABID97_RS24380 0.75 -0.0 5,046,848 + ABID97_RS24380 0.75 +0.7 5,046,849 - ABID97_RS24380 0.75 +0.6 5,046,849 - ABID97_RS24380 0.75 -0.6 5,046,849 - ABID97_RS24380 0.75 +0.3 5,046,849 - ABID97_RS24380 0.75 +0.1 5,046,875 + ABID97_RS24380 0.79 -0.4 5,046,875 + ABID97_RS24380 0.79 +0.2 5,046,875 + ABID97_RS24380 0.79 +0.1 5,046,875 + ABID97_RS24380 0.79 -0.6 5,046,959 + -0.0 5,046,960 - +0.7 5,047,102 + ABID97_RS24385 0.10 +0.1 5,047,103 - ABID97_RS24385 0.10 +0.1 5,047,132 + ABID97_RS24385 0.15 +0.1 5,047,133 - ABID97_RS24385 0.15 +0.2 5,047,480 + ABID97_RS24385 0.72 +0.1 5,047,481 - ABID97_RS24385 0.72 +0.3 5,047,594 + -0.9 5,047,595 - -0.3 5,047,595 - -0.2 5,047,595 - -0.3 5,047,796 + -1.8 5,047,796 + +0.6 5,047,926 - ABID97_RS24390 0.28 -0.5 5,048,108 + ABID97_RS24390 0.55 -0.4 5,048,108 + ABID97_RS24390 0.55 +0.7 5,048,108 + ABID97_RS24390 0.55 -1.3 5,048,109 - ABID97_RS24390 0.55 -1.0 5,048,109 - ABID97_RS24390 0.55 -0.7 5,048,111 + ABID97_RS24390 0.55 +0.9 5,048,111 + ABID97_RS24390 0.55 -1.4 5,048,112 - ABID97_RS24390 0.55 +0.9 5,048,112 - ABID97_RS24390 0.55 -1.4 5,048,195 + ABID97_RS24390 0.67 +0.7 5,048,195 + ABID97_RS24390 0.67 -0.9 5,048,219 + ABID97_RS24390 0.71 +0.1 5,048,219 + ABID97_RS24390 0.71 -0.4 5,048,219 + ABID97_RS24390 0.71 -0.4 5,048,446 + -0.1 5,048,472 + -0.3 5,048,472 + -1.2 5,048,473 - +0.8 5,048,474 + -0.3 5,048,475 - -1.2 5,048,475 - -0.4 5,048,475 - +0.2 5,048,607 + -0.8 5,048,607 + +0.3 5,048,607 + -0.0 5,048,608 - -0.6 5,048,608 - -0.3 5,048,608 - +0.9 5,048,608 - +1.2 5,048,608 - +0.1
Or see this region's nucleotide sequence