Experiment: Plant outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23460 and ABID97_RS23465 are separated by 64 nucleotides ABID97_RS23465 and ABID97_RS23470 are separated by 12 nucleotides ABID97_RS23470 and ABID97_RS23475 are separated by 52 nucleotides ABID97_RS23475 and ABID97_RS23480 overlap by 4 nucleotides
ABID97_RS23460: ABID97_RS23460 - cell division protein ZapD, at 4,852,171 to 4,852,926
_RS23460
ABID97_RS23465: ABID97_RS23465 - DNA gyrase inhibitor YacG, at 4,852,991 to 4,853,203
_RS23465
ABID97_RS23470: ABID97_RS23470 - acyltransferase family protein, at 4,853,216 to 4,855,162
_RS23470
ABID97_RS23475: ABID97_RS23475 - NUDIX domain-containing protein, at 4,855,215 to 4,855,676
_RS23475
ABID97_RS23480: ABID97_RS23480 - ATP-binding protein, at 4,855,673 to 4,856,548
_RS23480
Position (kb) 4853
4854
4855
4856 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4852.286 kb on - strand, within ABID97_RS23460 at 4852.286 kb on - strand, within ABID97_RS23460 at 4852.579 kb on + strand, within ABID97_RS23460 at 4852.579 kb on + strand, within ABID97_RS23460 at 4852.582 kb on + strand, within ABID97_RS23460 at 4852.583 kb on - strand, within ABID97_RS23460 at 4852.669 kb on + strand, within ABID97_RS23460 at 4852.670 kb on - strand, within ABID97_RS23460 at 4852.670 kb on - strand, within ABID97_RS23460 at 4852.670 kb on - strand, within ABID97_RS23460 at 4852.708 kb on + strand, within ABID97_RS23460 at 4852.708 kb on + strand at 4852.708 kb on + strand at 4852.709 kb on - strand, within ABID97_RS23460 at 4852.709 kb on - strand, within ABID97_RS23460 at 4852.985 kb on + strand at 4852.985 kb on + strand at 4852.985 kb on + strand at 4852.986 kb on - strand at 4853.202 kb on - strand at 4853.265 kb on + strand at 4853.266 kb on - strand at 4853.296 kb on - strand at 4853.296 kb on - strand at 4853.296 kb on - strand at 4853.541 kb on + strand, within ABID97_RS23470 at 4853.541 kb on + strand, within ABID97_RS23470 at 4853.541 kb on + strand, within ABID97_RS23470 at 4853.541 kb on + strand, within ABID97_RS23470 at 4853.541 kb on + strand, within ABID97_RS23470 at 4853.542 kb on - strand, within ABID97_RS23470 at 4853.688 kb on + strand, within ABID97_RS23470 at 4853.688 kb on + strand, within ABID97_RS23470 at 4853.689 kb on - strand, within ABID97_RS23470 at 4853.689 kb on - strand, within ABID97_RS23470 at 4853.689 kb on - strand, within ABID97_RS23470 at 4853.824 kb on - strand, within ABID97_RS23470 at 4853.835 kb on + strand, within ABID97_RS23470 at 4853.893 kb on - strand, within ABID97_RS23470 at 4853.893 kb on - strand, within ABID97_RS23470 at 4853.994 kb on + strand, within ABID97_RS23470 at 4853.994 kb on + strand at 4853.995 kb on - strand, within ABID97_RS23470 at 4853.997 kb on + strand, within ABID97_RS23470 at 4853.997 kb on + strand, within ABID97_RS23470 at 4853.997 kb on + strand, within ABID97_RS23470 at 4853.997 kb on + strand, within ABID97_RS23470 at 4853.998 kb on - strand, within ABID97_RS23470 at 4853.998 kb on - strand, within ABID97_RS23470 at 4853.998 kb on - strand, within ABID97_RS23470 at 4853.998 kb on - strand, within ABID97_RS23470 at 4853.998 kb on - strand, within ABID97_RS23470 at 4853.998 kb on - strand, within ABID97_RS23470 at 4854.258 kb on + strand, within ABID97_RS23470 at 4854.259 kb on - strand, within ABID97_RS23470 at 4854.295 kb on - strand, within ABID97_RS23470 at 4854.295 kb on - strand, within ABID97_RS23470 at 4854.588 kb on + strand, within ABID97_RS23470 at 4854.588 kb on + strand, within ABID97_RS23470 at 4854.588 kb on + strand, within ABID97_RS23470 at 4854.588 kb on + strand, within ABID97_RS23470 at 4854.588 kb on + strand, within ABID97_RS23470 at 4854.589 kb on - strand, within ABID97_RS23470 at 4854.589 kb on - strand, within ABID97_RS23470 at 4854.589 kb on - strand, within ABID97_RS23470 at 4854.723 kb on + strand, within ABID97_RS23470 at 4854.723 kb on + strand, within ABID97_RS23470 at 4854.723 kb on + strand, within ABID97_RS23470 at 4854.723 kb on + strand, within ABID97_RS23470 at 4854.723 kb on + strand, within ABID97_RS23470 at 4854.723 kb on + strand, within ABID97_RS23470 at 4854.724 kb on - strand, within ABID97_RS23470 at 4854.724 kb on - strand, within ABID97_RS23470 at 4854.724 kb on - strand, within ABID97_RS23470 at 4854.724 kb on - strand, within ABID97_RS23470 at 4854.792 kb on + strand, within ABID97_RS23470 at 4854.792 kb on + strand, within ABID97_RS23470 at 4854.960 kb on + strand, within ABID97_RS23470 at 4854.961 kb on - strand, within ABID97_RS23470 at 4855.553 kb on - strand, within ABID97_RS23475 at 4855.561 kb on + strand, within ABID97_RS23475 at 4855.561 kb on + strand, within ABID97_RS23475 at 4855.561 kb on + strand, within ABID97_RS23475 at 4855.561 kb on + strand, within ABID97_RS23475 at 4855.562 kb on - strand, within ABID97_RS23475 at 4855.562 kb on - strand, within ABID97_RS23475 at 4855.562 kb on - strand, within ABID97_RS23475 at 4855.562 kb on - strand, within ABID97_RS23475 at 4855.696 kb on - strand at 4855.836 kb on + strand, within ABID97_RS23480 at 4855.837 kb on - strand, within ABID97_RS23480 at 4855.857 kb on + strand, within ABID97_RS23480 at 4855.857 kb on + strand, within ABID97_RS23480 at 4855.858 kb on - strand, within ABID97_RS23480 at 4855.858 kb on - strand, within ABID97_RS23480 at 4855.858 kb on - strand, within ABID97_RS23480 at 4855.858 kb on - strand, within ABID97_RS23480 at 4855.858 kb on - strand, within ABID97_RS23480 at 4855.950 kb on + strand, within ABID97_RS23480 at 4855.950 kb on + strand, within ABID97_RS23480 at 4855.951 kb on - strand, within ABID97_RS23480 at 4855.951 kb on - strand, within ABID97_RS23480 at 4855.971 kb on + strand, within ABID97_RS23480 at 4855.972 kb on - strand, within ABID97_RS23480 at 4855.972 kb on - strand, within ABID97_RS23480 at 4856.007 kb on + strand, within ABID97_RS23480 at 4856.008 kb on - strand, within ABID97_RS23480 at 4856.070 kb on + strand, within ABID97_RS23480 at 4856.071 kb on - strand, within ABID97_RS23480
Per-strain Table
Position Strand Gene LocusTag Fraction Plant outgrowth control remove 4,852,286 - ABID97_RS23460 0.15 +0.6 4,852,286 - ABID97_RS23460 0.15 +0.4 4,852,579 + ABID97_RS23460 0.54 +1.4 4,852,579 + ABID97_RS23460 0.54 +1.0 4,852,582 + ABID97_RS23460 0.54 +0.2 4,852,583 - ABID97_RS23460 0.54 +0.2 4,852,669 + ABID97_RS23460 0.66 +0.6 4,852,670 - ABID97_RS23460 0.66 +0.2 4,852,670 - ABID97_RS23460 0.66 +0.0 4,852,670 - ABID97_RS23460 0.66 +0.1 4,852,708 + ABID97_RS23460 0.71 -0.6 4,852,708 + +0.9 4,852,708 + +0.9 4,852,709 - ABID97_RS23460 0.71 -0.4 4,852,709 - ABID97_RS23460 0.71 +0.1 4,852,985 + +0.5 4,852,985 + +0.7 4,852,985 + -0.6 4,852,986 - -0.4 4,853,202 - +0.2 4,853,265 + -0.2 4,853,266 - +0.0 4,853,296 - +0.5 4,853,296 - -0.1 4,853,296 - -0.2 4,853,541 + ABID97_RS23470 0.17 -0.4 4,853,541 + ABID97_RS23470 0.17 -0.4 4,853,541 + ABID97_RS23470 0.17 +0.0 4,853,541 + ABID97_RS23470 0.17 -0.1 4,853,541 + ABID97_RS23470 0.17 -0.4 4,853,542 - ABID97_RS23470 0.17 -0.6 4,853,688 + ABID97_RS23470 0.24 -0.2 4,853,688 + ABID97_RS23470 0.24 +1.3 4,853,689 - ABID97_RS23470 0.24 -0.5 4,853,689 - ABID97_RS23470 0.24 -0.1 4,853,689 - ABID97_RS23470 0.24 -0.2 4,853,824 - ABID97_RS23470 0.31 -0.3 4,853,835 + ABID97_RS23470 0.32 -0.2 4,853,893 - ABID97_RS23470 0.35 -0.6 4,853,893 - ABID97_RS23470 0.35 -0.8 4,853,994 + ABID97_RS23470 0.40 +1.1 4,853,994 + +1.9 4,853,995 - ABID97_RS23470 0.40 -0.9 4,853,997 + ABID97_RS23470 0.40 -0.7 4,853,997 + ABID97_RS23470 0.40 -0.8 4,853,997 + ABID97_RS23470 0.40 +0.1 4,853,997 + ABID97_RS23470 0.40 -0.3 4,853,998 - ABID97_RS23470 0.40 +0.3 4,853,998 - ABID97_RS23470 0.40 +1.2 4,853,998 - ABID97_RS23470 0.40 -0.6 4,853,998 - ABID97_RS23470 0.40 -0.4 4,853,998 - ABID97_RS23470 0.40 +0.0 4,853,998 - ABID97_RS23470 0.40 -0.5 4,854,258 + ABID97_RS23470 0.54 +0.0 4,854,259 - ABID97_RS23470 0.54 -0.5 4,854,295 - ABID97_RS23470 0.55 -0.7 4,854,295 - ABID97_RS23470 0.55 -1.1 4,854,588 + ABID97_RS23470 0.70 +0.0 4,854,588 + ABID97_RS23470 0.70 -0.3 4,854,588 + ABID97_RS23470 0.70 -0.9 4,854,588 + ABID97_RS23470 0.70 -1.3 4,854,588 + ABID97_RS23470 0.70 -2.0 4,854,589 - ABID97_RS23470 0.71 +0.2 4,854,589 - ABID97_RS23470 0.71 -0.0 4,854,589 - ABID97_RS23470 0.71 -0.4 4,854,723 + ABID97_RS23470 0.77 -0.6 4,854,723 + ABID97_RS23470 0.77 -1.2 4,854,723 + ABID97_RS23470 0.77 -0.7 4,854,723 + ABID97_RS23470 0.77 -0.5 4,854,723 + ABID97_RS23470 0.77 -1.9 4,854,723 + ABID97_RS23470 0.77 -0.2 4,854,724 - ABID97_RS23470 0.77 -0.3 4,854,724 - ABID97_RS23470 0.77 +0.4 4,854,724 - ABID97_RS23470 0.77 -0.2 4,854,724 - ABID97_RS23470 0.77 -0.5 4,854,792 + ABID97_RS23470 0.81 +0.2 4,854,792 + ABID97_RS23470 0.81 -0.1 4,854,960 + ABID97_RS23470 0.90 +0.2 4,854,961 - ABID97_RS23470 0.90 +0.2 4,855,553 - ABID97_RS23475 0.73 -0.1 4,855,561 + ABID97_RS23475 0.75 -0.1 4,855,561 + ABID97_RS23475 0.75 -0.5 4,855,561 + ABID97_RS23475 0.75 -0.0 4,855,561 + ABID97_RS23475 0.75 +0.5 4,855,562 - ABID97_RS23475 0.75 -0.0 4,855,562 - ABID97_RS23475 0.75 -0.1 4,855,562 - ABID97_RS23475 0.75 +0.2 4,855,562 - ABID97_RS23475 0.75 +0.0 4,855,696 - -0.2 4,855,836 + ABID97_RS23480 0.19 +1.5 4,855,837 - ABID97_RS23480 0.19 +0.7 4,855,857 + ABID97_RS23480 0.21 -1.9 4,855,857 + ABID97_RS23480 0.21 +0.2 4,855,858 - ABID97_RS23480 0.21 -0.4 4,855,858 - ABID97_RS23480 0.21 +0.0 4,855,858 - ABID97_RS23480 0.21 +0.2 4,855,858 - ABID97_RS23480 0.21 -1.1 4,855,858 - ABID97_RS23480 0.21 +0.0 4,855,950 + ABID97_RS23480 0.32 +0.2 4,855,950 + ABID97_RS23480 0.32 -1.3 4,855,951 - ABID97_RS23480 0.32 -0.1 4,855,951 - ABID97_RS23480 0.32 +0.2 4,855,971 + ABID97_RS23480 0.34 +0.3 4,855,972 - ABID97_RS23480 0.34 -0.1 4,855,972 - ABID97_RS23480 0.34 -0.9 4,856,007 + ABID97_RS23480 0.38 -0.0 4,856,008 - ABID97_RS23480 0.38 -0.0 4,856,070 + ABID97_RS23480 0.45 +0.4 4,856,071 - ABID97_RS23480 0.45 -0.3
Or see this region's nucleotide sequence