Experiment: Plant outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20025 and ABID97_RS20030 are separated by 2 nucleotides ABID97_RS20030 and ABID97_RS20035 are separated by 14 nucleotides ABID97_RS20035 and ABID97_RS20040 are separated by 0 nucleotides
ABID97_RS20025: ABID97_RS20025 - D-glycerate dehydrogenase, at 4,139,807 to 4,140,790
_RS20025
ABID97_RS20030: ABID97_RS20030 - sugar kinase, at 4,140,793 to 4,141,746
_RS20030
ABID97_RS20035: ABID97_RS20035 - glutamine ABC transporter ATP-binding protein, at 4,141,761 to 4,142,504
_RS20035
ABID97_RS20040: ABID97_RS20040 - amino acid ABC transporter ATP-binding protein, at 4,142,505 to 4,143,260
_RS20040
Position (kb) 4140
4141
4142 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4140.552 kb on + strand, within ABID97_RS20025 at 4140.553 kb on - strand, within ABID97_RS20025 at 4140.782 kb on - strand at 4140.851 kb on - strand at 4141.028 kb on + strand, within ABID97_RS20030 at 4141.028 kb on + strand, within ABID97_RS20030 at 4141.029 kb on - strand, within ABID97_RS20030 at 4141.029 kb on - strand, within ABID97_RS20030 at 4141.029 kb on - strand, within ABID97_RS20030 at 4141.032 kb on - strand, within ABID97_RS20030 at 4141.419 kb on - strand, within ABID97_RS20030 at 4141.541 kb on + strand, within ABID97_RS20030 at 4141.542 kb on - strand, within ABID97_RS20030 at 4141.960 kb on + strand, within ABID97_RS20035 at 4141.960 kb on + strand, within ABID97_RS20035
Per-strain Table
Position Strand Gene LocusTag Fraction Plant outgrowth control remove 4,140,552 + ABID97_RS20025 0.76 +0.5 4,140,553 - ABID97_RS20025 0.76 -1.0 4,140,782 - -0.7 4,140,851 - -2.9 4,141,028 + ABID97_RS20030 0.25 -2.0 4,141,028 + ABID97_RS20030 0.25 -0.7 4,141,029 - ABID97_RS20030 0.25 +0.3 4,141,029 - ABID97_RS20030 0.25 -0.4 4,141,029 - ABID97_RS20030 0.25 +0.4 4,141,032 - ABID97_RS20030 0.25 -1.0 4,141,419 - ABID97_RS20030 0.66 -0.3 4,141,541 + ABID97_RS20030 0.78 -1.2 4,141,542 - ABID97_RS20030 0.79 -0.9 4,141,960 + ABID97_RS20035 0.27 +0.2 4,141,960 + ABID97_RS20035 0.27 -1.7
Or see this region's nucleotide sequence