Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16485

Experiment: Plant outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16475 and ABID97_RS16480 are separated by 2 nucleotidesABID97_RS16480 and ABID97_RS16485 are separated by 21 nucleotidesABID97_RS16485 and ABID97_RS16490 are separated by 24 nucleotides ABID97_RS16475: ABID97_RS16475 - tRNA pseudouridine(55) synthase TruB, at 3,406,210 to 3,407,166 _RS16475 ABID97_RS16480: ABID97_RS16480 - 30S ribosome-binding factor RbfA, at 3,407,169 to 3,407,540 _RS16480 ABID97_RS16485: ABID97_RS16485 - translation initiation factor IF-2, at 3,407,562 to 3,410,525 _RS16485 ABID97_RS16490: ABID97_RS16490 - transcription termination factor NusA, at 3,410,550 to 3,412,034 _RS16490 Position (kb) 3407 3408 3409 3410 3411Strain fitness (log2 ratio) -1 0 1at 3406.625 kb on + strand, within ABID97_RS16475at 3406.625 kb on + strand, within ABID97_RS16475at 3406.625 kb on + strand, within ABID97_RS16475at 3406.625 kb on + strand, within ABID97_RS16475at 3406.625 kb on + strand, within ABID97_RS16475at 3406.626 kb on - strand, within ABID97_RS16475at 3406.626 kb on - strand, within ABID97_RS16475at 3406.626 kb on - strand, within ABID97_RS16475at 3406.626 kb on - strand, within ABID97_RS16475at 3406.626 kb on - strand, within ABID97_RS16475at 3406.626 kb on - strand, within ABID97_RS16475at 3406.751 kb on + strand, within ABID97_RS16475at 3406.752 kb on - strand, within ABID97_RS16475at 3406.752 kb on - strand, within ABID97_RS16475at 3406.935 kb on - strand, within ABID97_RS16475at 3407.564 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant outgrowth control
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3,406,625 + ABID97_RS16475 0.43 +0.7
3,406,625 + ABID97_RS16475 0.43 +0.7
3,406,625 + ABID97_RS16475 0.43 -1.7
3,406,625 + ABID97_RS16475 0.43 +0.7
3,406,625 + ABID97_RS16475 0.43 -0.9
3,406,626 - ABID97_RS16475 0.43 -0.2
3,406,626 - ABID97_RS16475 0.43 +0.4
3,406,626 - ABID97_RS16475 0.43 -0.1
3,406,626 - ABID97_RS16475 0.43 +0.1
3,406,626 - ABID97_RS16475 0.43 +0.6
3,406,626 - ABID97_RS16475 0.43 +0.4
3,406,751 + ABID97_RS16475 0.57 -0.1
3,406,752 - ABID97_RS16475 0.57 -0.6
3,406,752 - ABID97_RS16475 0.57 +0.3
3,406,935 - ABID97_RS16475 0.76 +0.6
3,407,564 - -0.1

Or see this region's nucleotide sequence