Experiment: Plant outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16475 and ABID97_RS16480 are separated by 2 nucleotides ABID97_RS16480 and ABID97_RS16485 are separated by 21 nucleotides ABID97_RS16485 and ABID97_RS16490 are separated by 24 nucleotides
ABID97_RS16475: ABID97_RS16475 - tRNA pseudouridine(55) synthase TruB, at 3,406,210 to 3,407,166
_RS16475
ABID97_RS16480: ABID97_RS16480 - 30S ribosome-binding factor RbfA, at 3,407,169 to 3,407,540
_RS16480
ABID97_RS16485: ABID97_RS16485 - translation initiation factor IF-2, at 3,407,562 to 3,410,525
_RS16485
ABID97_RS16490: ABID97_RS16490 - transcription termination factor NusA, at 3,410,550 to 3,412,034
_RS16490
Position (kb)
3407
3408
3409
3410
3411 Strain fitness (log2 ratio)
-1
0
1 at 3406.625 kb on + strand, within ABID97_RS16475 at 3406.625 kb on + strand, within ABID97_RS16475 at 3406.625 kb on + strand, within ABID97_RS16475 at 3406.625 kb on + strand, within ABID97_RS16475 at 3406.625 kb on + strand, within ABID97_RS16475 at 3406.626 kb on - strand, within ABID97_RS16475 at 3406.626 kb on - strand, within ABID97_RS16475 at 3406.626 kb on - strand, within ABID97_RS16475 at 3406.626 kb on - strand, within ABID97_RS16475 at 3406.626 kb on - strand, within ABID97_RS16475 at 3406.626 kb on - strand, within ABID97_RS16475 at 3406.751 kb on + strand, within ABID97_RS16475 at 3406.752 kb on - strand, within ABID97_RS16475 at 3406.752 kb on - strand, within ABID97_RS16475 at 3406.935 kb on - strand, within ABID97_RS16475 at 3407.564 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant outgrowth control remove 3,406,625 + ABID97_RS16475 0.43 +0.7 3,406,625 + ABID97_RS16475 0.43 +0.7 3,406,625 + ABID97_RS16475 0.43 -1.7 3,406,625 + ABID97_RS16475 0.43 +0.7 3,406,625 + ABID97_RS16475 0.43 -0.9 3,406,626 - ABID97_RS16475 0.43 -0.2 3,406,626 - ABID97_RS16475 0.43 +0.4 3,406,626 - ABID97_RS16475 0.43 -0.1 3,406,626 - ABID97_RS16475 0.43 +0.1 3,406,626 - ABID97_RS16475 0.43 +0.6 3,406,626 - ABID97_RS16475 0.43 +0.4 3,406,751 + ABID97_RS16475 0.57 -0.1 3,406,752 - ABID97_RS16475 0.57 -0.6 3,406,752 - ABID97_RS16475 0.57 +0.3 3,406,935 - ABID97_RS16475 0.76 +0.6 3,407,564 - -0.1
Or see this region's nucleotide sequence