Experiment: Plant outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13610 and ABID97_RS13615 overlap by 4 nucleotides ABID97_RS13615 and ABID97_RS13620 overlap by 10 nucleotides ABID97_RS13620 and ABID97_RS13625 are separated by 5 nucleotides ABID97_RS13625 and ABID97_RS13630 are separated by 12 nucleotides
ABID97_RS13610: ABID97_RS13610 - hydrogenase formation protein HypD, at 2,837,033 to 2,838,181
_RS13610
ABID97_RS13615: ABID97_RS13615 - HypC/HybG/HupF family hydrogenase formation chaperone, at 2,838,178 to 2,838,423
_RS13615
ABID97_RS13620: ABID97_RS13620 - carbamoyltransferase HypF, at 2,838,414 to 2,839,562
_RS13620
ABID97_RS13625: ABID97_RS13625 - hydrogenase nickel incorporation protein HypB, at 2,839,568 to 2,840,413
_RS13625
ABID97_RS13630: ABID97_RS13630 - hydrogenase maturation nickel metallochaperone HypA, at 2,840,426 to 2,840,773
_RS13630
Position (kb)
2838
2839
2840 Strain fitness (log2 ratio)
-1
0
1 at 2837.827 kb on - strand, within ABID97_RS13610 at 2837.910 kb on + strand, within ABID97_RS13610 at 2837.910 kb on + strand, within ABID97_RS13610 at 2838.094 kb on - strand at 2838.174 kb on + strand at 2838.299 kb on + strand, within ABID97_RS13615 at 2839.348 kb on + strand, within ABID97_RS13620 at 2839.785 kb on + strand, within ABID97_RS13625 at 2839.786 kb on - strand, within ABID97_RS13625
Per-strain Table
Position Strand Gene LocusTag Fraction Plant outgrowth control remove 2,837,827 - ABID97_RS13610 0.69 -0.4 2,837,910 + ABID97_RS13610 0.76 +0.2 2,837,910 + ABID97_RS13610 0.76 +0.3 2,838,094 - +0.1 2,838,174 + +0.1 2,838,299 + ABID97_RS13615 0.49 +0.9 2,839,348 + ABID97_RS13620 0.81 +0.3 2,839,785 + ABID97_RS13625 0.26 -0.9 2,839,786 - ABID97_RS13625 0.26 -0.2
Or see this region's nucleotide sequence