Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13620

Experiment: Plant outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13610 and ABID97_RS13615 overlap by 4 nucleotidesABID97_RS13615 and ABID97_RS13620 overlap by 10 nucleotidesABID97_RS13620 and ABID97_RS13625 are separated by 5 nucleotidesABID97_RS13625 and ABID97_RS13630 are separated by 12 nucleotides ABID97_RS13610: ABID97_RS13610 - hydrogenase formation protein HypD, at 2,837,033 to 2,838,181 _RS13610 ABID97_RS13615: ABID97_RS13615 - HypC/HybG/HupF family hydrogenase formation chaperone, at 2,838,178 to 2,838,423 _RS13615 ABID97_RS13620: ABID97_RS13620 - carbamoyltransferase HypF, at 2,838,414 to 2,839,562 _RS13620 ABID97_RS13625: ABID97_RS13625 - hydrogenase nickel incorporation protein HypB, at 2,839,568 to 2,840,413 _RS13625 ABID97_RS13630: ABID97_RS13630 - hydrogenase maturation nickel metallochaperone HypA, at 2,840,426 to 2,840,773 _RS13630 Position (kb) 2838 2839 2840Strain fitness (log2 ratio) -1 0 1at 2837.827 kb on - strand, within ABID97_RS13610at 2837.910 kb on + strand, within ABID97_RS13610at 2837.910 kb on + strand, within ABID97_RS13610at 2838.094 kb on - strandat 2838.174 kb on + strandat 2838.299 kb on + strand, within ABID97_RS13615at 2839.348 kb on + strand, within ABID97_RS13620at 2839.785 kb on + strand, within ABID97_RS13625at 2839.786 kb on - strand, within ABID97_RS13625

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant outgrowth control
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2,837,827 - ABID97_RS13610 0.69 -0.4
2,837,910 + ABID97_RS13610 0.76 +0.2
2,837,910 + ABID97_RS13610 0.76 +0.3
2,838,094 - +0.1
2,838,174 + +0.1
2,838,299 + ABID97_RS13615 0.49 +0.9
2,839,348 + ABID97_RS13620 0.81 +0.3
2,839,785 + ABID97_RS13625 0.26 -0.9
2,839,786 - ABID97_RS13625 0.26 -0.2

Or see this region's nucleotide sequence