Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13485

Experiment: Plant outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13480 and ABID97_RS13485 are separated by 32 nucleotidesABID97_RS13485 and ABID97_RS13490 are separated by 135 nucleotides ABID97_RS13480: ABID97_RS13480 - FAD-dependent monooxygenase, at 2,805,427 to 2,806,647 _RS13480 ABID97_RS13485: ABID97_RS13485 - LysR family transcriptional regulator, at 2,806,680 to 2,807,597 _RS13485 ABID97_RS13490: ABID97_RS13490 - dihydrodipicolinate synthase family protein, at 2,807,733 to 2,808,752 _RS13490 Position (kb) 2806 2807 2808Strain fitness (log2 ratio) -1 0 1 2at 2805.965 kb on - strand, within ABID97_RS13480at 2806.628 kb on - strandat 2807.661 kb on + strandat 2807.738 kb on + strandat 2807.739 kb on - strandat 2807.743 kb on - strandat 2808.315 kb on + strand, within ABID97_RS13490at 2808.315 kb on + strand, within ABID97_RS13490at 2808.316 kb on - strand, within ABID97_RS13490at 2808.435 kb on + strand, within ABID97_RS13490at 2808.436 kb on - strand, within ABID97_RS13490at 2808.547 kb on - strand, within ABID97_RS13490

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant outgrowth control
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2,805,965 - ABID97_RS13480 0.44 -0.6
2,806,628 - -0.4
2,807,661 + -0.6
2,807,738 + +0.0
2,807,739 - -1.1
2,807,743 - +0.1
2,808,315 + ABID97_RS13490 0.57 +1.9
2,808,315 + ABID97_RS13490 0.57 +0.1
2,808,316 - ABID97_RS13490 0.57 +0.3
2,808,435 + ABID97_RS13490 0.69 -0.8
2,808,436 - ABID97_RS13490 0.69 +0.2
2,808,547 - ABID97_RS13490 0.80 +1.4

Or see this region's nucleotide sequence