Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13480

Experiment: Plant outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13475 and ABID97_RS13480 overlap by 89 nucleotidesABID97_RS13480 and ABID97_RS13485 are separated by 32 nucleotides ABID97_RS13475: ABID97_RS13475 - MFS transporter, at 2,804,337 to 2,805,515 _RS13475 ABID97_RS13480: ABID97_RS13480 - FAD-dependent monooxygenase, at 2,805,427 to 2,806,647 _RS13480 ABID97_RS13485: ABID97_RS13485 - LysR family transcriptional regulator, at 2,806,680 to 2,807,597 _RS13485 Position (kb) 2805 2806 2807Strain fitness (log2 ratio) -1 0 1at 2805.595 kb on + strand, within ABID97_RS13480at 2805.965 kb on - strand, within ABID97_RS13480at 2806.628 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant outgrowth control
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2,805,595 + ABID97_RS13480 0.14 -0.1
2,805,965 - ABID97_RS13480 0.44 -0.6
2,806,628 - -0.4

Or see this region's nucleotide sequence