Experiment: Plant outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08590 and ABID97_RS08595 are separated by 16 nucleotides ABID97_RS08595 and ABID97_RS08600 are separated by 13 nucleotides ABID97_RS08600 and ABID97_RS08605 are separated by 10 nucleotides ABID97_RS08605 and ABID97_RS08610 are separated by 77 nucleotides
ABID97_RS08590: ABID97_RS08590 - tryptophan 2,3-dioxygenase, at 1,805,080 to 1,805,916
_RS08590
ABID97_RS08595: ABID97_RS08595 - hypothetical protein, at 1,805,933 to 1,806,418
_RS08595
ABID97_RS08600: ABID97_RS08600 - kynureninase, at 1,806,432 to 1,807,718
_RS08600
ABID97_RS08605: ABID97_RS08605 - arylformamidase, at 1,807,729 to 1,808,379
_RS08605
ABID97_RS08610: ABID97_RS08610 - YkgJ family cysteine cluster protein, at 1,808,457 to 1,808,771
_RS08610
Position (kb) 1806
1807
1808 Strain fitness (log2 ratio) -1
0
1
2
3 at 1805.592 kb on - strand, within ABID97_RS08590 at 1805.853 kb on - strand at 1805.955 kb on + strand at 1805.955 kb on + strand at 1805.955 kb on + strand at 1806.034 kb on - strand, within ABID97_RS08595 at 1806.034 kb on - strand, within ABID97_RS08595 at 1806.171 kb on + strand, within ABID97_RS08595 at 1806.172 kb on - strand, within ABID97_RS08595 at 1806.172 kb on - strand, within ABID97_RS08595 at 1806.219 kb on + strand, within ABID97_RS08595 at 1806.261 kb on + strand, within ABID97_RS08595 at 1806.538 kb on + strand at 1806.539 kb on - strand at 1806.539 kb on - strand at 1806.919 kb on + strand, within ABID97_RS08600 at 1807.042 kb on + strand, within ABID97_RS08600 at 1807.042 kb on + strand, within ABID97_RS08600 at 1807.042 kb on + strand, within ABID97_RS08600 at 1807.043 kb on - strand, within ABID97_RS08600 at 1807.049 kb on - strand, within ABID97_RS08600 at 1807.198 kb on + strand, within ABID97_RS08600 at 1807.198 kb on + strand, within ABID97_RS08600 at 1807.198 kb on + strand, within ABID97_RS08600 at 1807.199 kb on - strand, within ABID97_RS08600 at 1807.199 kb on - strand, within ABID97_RS08600 at 1807.324 kb on + strand, within ABID97_RS08600 at 1807.325 kb on - strand, within ABID97_RS08600 at 1807.325 kb on - strand, within ABID97_RS08600 at 1807.325 kb on - strand, within ABID97_RS08600 at 1807.325 kb on - strand, within ABID97_RS08600 at 1807.325 kb on - strand, within ABID97_RS08600 at 1807.414 kb on + strand, within ABID97_RS08600 at 1807.414 kb on + strand, within ABID97_RS08600 at 1807.415 kb on - strand, within ABID97_RS08600 at 1807.415 kb on - strand, within ABID97_RS08600 at 1807.627 kb on + strand at 1807.627 kb on + strand at 1807.628 kb on - strand at 1807.751 kb on - strand at 1807.811 kb on + strand, within ABID97_RS08605 at 1807.811 kb on + strand, within ABID97_RS08605 at 1808.030 kb on + strand, within ABID97_RS08605 at 1808.030 kb on + strand, within ABID97_RS08605 at 1808.552 kb on - strand, within ABID97_RS08610 at 1808.552 kb on - strand, within ABID97_RS08610 at 1808.552 kb on - strand, within ABID97_RS08610 at 1808.552 kb on - strand, within ABID97_RS08610 at 1808.552 kb on - strand, within ABID97_RS08610
Per-strain Table
Position Strand Gene LocusTag Fraction Plant outgrowth control remove 1,805,592 - ABID97_RS08590 0.61 -0.1 1,805,853 - -0.2 1,805,955 + +0.9 1,805,955 + -0.2 1,805,955 + -0.1 1,806,034 - ABID97_RS08595 0.21 +0.1 1,806,034 - ABID97_RS08595 0.21 +0.7 1,806,171 + ABID97_RS08595 0.49 -1.0 1,806,172 - ABID97_RS08595 0.49 +0.8 1,806,172 - ABID97_RS08595 0.49 -1.6 1,806,219 + ABID97_RS08595 0.59 +0.5 1,806,261 + ABID97_RS08595 0.67 -0.2 1,806,538 + +0.3 1,806,539 - +0.0 1,806,539 - -0.5 1,806,919 + ABID97_RS08600 0.38 +0.1 1,807,042 + ABID97_RS08600 0.47 -0.9 1,807,042 + ABID97_RS08600 0.47 -0.9 1,807,042 + ABID97_RS08600 0.47 -0.9 1,807,043 - ABID97_RS08600 0.47 -0.4 1,807,049 - ABID97_RS08600 0.48 +0.6 1,807,198 + ABID97_RS08600 0.60 -0.9 1,807,198 + ABID97_RS08600 0.60 -0.0 1,807,198 + ABID97_RS08600 0.60 -0.5 1,807,199 - ABID97_RS08600 0.60 +1.1 1,807,199 - ABID97_RS08600 0.60 +0.2 1,807,324 + ABID97_RS08600 0.69 +0.0 1,807,325 - ABID97_RS08600 0.69 -0.2 1,807,325 - ABID97_RS08600 0.69 -0.2 1,807,325 - ABID97_RS08600 0.69 -0.2 1,807,325 - ABID97_RS08600 0.69 +0.4 1,807,325 - ABID97_RS08600 0.69 +0.6 1,807,414 + ABID97_RS08600 0.76 +0.2 1,807,414 + ABID97_RS08600 0.76 +1.1 1,807,415 - ABID97_RS08600 0.76 +0.3 1,807,415 - ABID97_RS08600 0.76 +0.3 1,807,627 + +0.6 1,807,627 + +0.5 1,807,628 - +0.0 1,807,751 - -0.0 1,807,811 + ABID97_RS08605 0.13 +0.2 1,807,811 + ABID97_RS08605 0.13 +0.6 1,808,030 + ABID97_RS08605 0.46 -0.2 1,808,030 + ABID97_RS08605 0.46 -0.5 1,808,552 - ABID97_RS08610 0.30 +0.6 1,808,552 - ABID97_RS08610 0.30 -0.3 1,808,552 - ABID97_RS08610 0.30 +0.2 1,808,552 - ABID97_RS08610 0.30 -0.5 1,808,552 - ABID97_RS08610 0.30 +3.4
Or see this region's nucleotide sequence