Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05665

Experiment: Plant outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05660 and ABID97_RS05665 overlap by 4 nucleotidesABID97_RS05665 and ABID97_RS05670 are separated by 37 nucleotidesABID97_RS05670 and ABID97_RS05675 overlap by 4 nucleotides ABID97_RS05660: ABID97_RS05660 - dTDP-glucose 4,6-dehydratase, at 1,190,458 to 1,191,540 _RS05660 ABID97_RS05665: ABID97_RS05665 - dTDP-4-dehydrorhamnose reductase, at 1,191,537 to 1,192,427 _RS05665 ABID97_RS05670: ABID97_RS05670 - glucose-1-phosphate thymidylyltransferase RfbA, at 1,192,465 to 1,193,364 _RS05670 ABID97_RS05675: ABID97_RS05675 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,193,361 to 1,193,909 _RS05675 Position (kb) 1191 1192 1193Strain fitness (log2 ratio) -2 -1 0 1at 1191.505 kb on + strandat 1191.505 kb on + strandat 1191.506 kb on - strandat 1192.571 kb on - strand, within ABID97_RS05670at 1192.588 kb on + strand, within ABID97_RS05670at 1192.588 kb on + strand, within ABID97_RS05670at 1192.588 kb on + strand, within ABID97_RS05670at 1192.589 kb on - strand, within ABID97_RS05670at 1192.714 kb on + strand, within ABID97_RS05670at 1192.714 kb on + strand, within ABID97_RS05670at 1192.819 kb on + strand, within ABID97_RS05670at 1192.987 kb on + strand, within ABID97_RS05670at 1192.995 kb on + strand, within ABID97_RS05670at 1193.326 kb on + strandat 1193.327 kb on - strandat 1193.327 kb on - strandat 1193.327 kb on - strandat 1193.327 kb on - strandat 1193.354 kb on + strandat 1193.354 kb on + strandat 1193.355 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant outgrowth control
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1,191,505 + +1.0
1,191,505 + -0.3
1,191,506 - -0.2
1,192,571 - ABID97_RS05670 0.12 +1.0
1,192,588 + ABID97_RS05670 0.14 -0.0
1,192,588 + ABID97_RS05670 0.14 -1.6
1,192,588 + ABID97_RS05670 0.14 -1.6
1,192,589 - ABID97_RS05670 0.14 -0.6
1,192,714 + ABID97_RS05670 0.28 -1.6
1,192,714 + ABID97_RS05670 0.28 -0.0
1,192,819 + ABID97_RS05670 0.39 -0.6
1,192,987 + ABID97_RS05670 0.58 -1.4
1,192,995 + ABID97_RS05670 0.59 -1.6
1,193,326 + -1.0
1,193,327 - -1.0
1,193,327 - -1.8
1,193,327 - -2.2
1,193,327 - -0.0
1,193,354 + +0.1
1,193,354 + -0.6
1,193,355 - +0.3

Or see this region's nucleotide sequence