Experiment: Plant outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04035 and ABID97_RS04040 overlap by 4 nucleotides ABID97_RS04040 and ABID97_RS04045 are separated by 0 nucleotides ABID97_RS04045 and ABID97_RS04050 are separated by 91 nucleotides
ABID97_RS04035: ABID97_RS04035 - NAD(P)/FAD-dependent oxidoreductase, at 827,980 to 829,398
_RS04035
ABID97_RS04040: ABID97_RS04040 - (2Fe-2S)-binding protein, at 829,395 to 829,700
_RS04040
ABID97_RS04045: ABID97_RS04045 - ABC transporter permease, at 829,701 to 830,495
_RS04045
ABID97_RS04050: ABID97_RS04050 - ABC transporter permease, at 830,587 to 831,447
_RS04050
Position (kb) 829
830
831 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 828.759 kb on - strand, within ABID97_RS04035 at 828.759 kb on - strand, within ABID97_RS04035 at 828.759 kb on - strand, within ABID97_RS04035 at 828.759 kb on - strand, within ABID97_RS04035 at 828.762 kb on - strand, within ABID97_RS04035 at 828.762 kb on - strand, within ABID97_RS04035 at 828.882 kb on - strand, within ABID97_RS04035 at 828.893 kb on + strand, within ABID97_RS04035 at 828.894 kb on - strand, within ABID97_RS04035 at 828.984 kb on - strand, within ABID97_RS04035 at 829.058 kb on + strand, within ABID97_RS04035 at 829.215 kb on - strand, within ABID97_RS04035 at 829.683 kb on + strand at 829.703 kb on - strand at 829.735 kb on + strand at 829.828 kb on + strand, within ABID97_RS04045 at 829.828 kb on + strand, within ABID97_RS04045 at 829.828 kb on + strand, within ABID97_RS04045 at 829.828 kb on + strand, within ABID97_RS04045 at 829.828 kb on + strand, within ABID97_RS04045 at 829.828 kb on + strand, within ABID97_RS04045 at 829.829 kb on - strand, within ABID97_RS04045 at 829.829 kb on - strand, within ABID97_RS04045 at 829.829 kb on - strand, within ABID97_RS04045 at 829.829 kb on - strand, within ABID97_RS04045 at 829.829 kb on - strand, within ABID97_RS04045 at 829.829 kb on - strand, within ABID97_RS04045 at 829.834 kb on + strand, within ABID97_RS04045 at 829.834 kb on + strand, within ABID97_RS04045 at 829.834 kb on + strand, within ABID97_RS04045 at 829.834 kb on + strand, within ABID97_RS04045 at 829.834 kb on + strand, within ABID97_RS04045 at 829.834 kb on + strand, within ABID97_RS04045 at 829.835 kb on - strand, within ABID97_RS04045 at 830.066 kb on - strand, within ABID97_RS04045 at 830.553 kb on + strand at 830.607 kb on - strand at 830.630 kb on + strand at 830.631 kb on - strand at 830.720 kb on + strand, within ABID97_RS04050 at 830.999 kb on + strand, within ABID97_RS04050 at 830.999 kb on + strand, within ABID97_RS04050 at 831.174 kb on - strand, within ABID97_RS04050 at 831.254 kb on + strand, within ABID97_RS04050 at 831.258 kb on - strand, within ABID97_RS04050 at 831.281 kb on + strand, within ABID97_RS04050 at 831.329 kb on + strand, within ABID97_RS04050 at 831.330 kb on - strand, within ABID97_RS04050
Per-strain Table
Position Strand Gene LocusTag Fraction Plant outgrowth control remove 828,759 - ABID97_RS04035 0.55 -1.5 828,759 - ABID97_RS04035 0.55 +0.3 828,759 - ABID97_RS04035 0.55 -1.4 828,759 - ABID97_RS04035 0.55 -1.6 828,762 - ABID97_RS04035 0.55 -1.0 828,762 - ABID97_RS04035 0.55 -3.5 828,882 - ABID97_RS04035 0.64 -0.0 828,893 + ABID97_RS04035 0.64 -0.5 828,894 - ABID97_RS04035 0.64 -1.1 828,984 - ABID97_RS04035 0.71 -0.5 829,058 + ABID97_RS04035 0.76 -0.0 829,215 - ABID97_RS04035 0.87 +0.2 829,683 + +0.2 829,703 - +2.6 829,735 + +0.2 829,828 + ABID97_RS04045 0.16 -0.6 829,828 + ABID97_RS04045 0.16 +0.2 829,828 + ABID97_RS04045 0.16 -0.3 829,828 + ABID97_RS04045 0.16 -0.0 829,828 + ABID97_RS04045 0.16 +1.0 829,828 + ABID97_RS04045 0.16 -0.2 829,829 - ABID97_RS04045 0.16 +1.0 829,829 - ABID97_RS04045 0.16 -0.4 829,829 - ABID97_RS04045 0.16 -0.2 829,829 - ABID97_RS04045 0.16 -1.3 829,829 - ABID97_RS04045 0.16 +0.3 829,829 - ABID97_RS04045 0.16 +0.6 829,834 + ABID97_RS04045 0.17 -0.0 829,834 + ABID97_RS04045 0.17 -0.0 829,834 + ABID97_RS04045 0.17 -1.8 829,834 + ABID97_RS04045 0.17 -0.1 829,834 + ABID97_RS04045 0.17 -0.0 829,834 + ABID97_RS04045 0.17 -0.2 829,835 - ABID97_RS04045 0.17 -0.0 830,066 - ABID97_RS04045 0.46 -0.3 830,553 + -0.0 830,607 - +0.1 830,630 + +0.4 830,631 - -1.0 830,720 + ABID97_RS04050 0.15 -0.9 830,999 + ABID97_RS04050 0.48 +0.3 830,999 + ABID97_RS04050 0.48 -0.8 831,174 - ABID97_RS04050 0.68 +0.1 831,254 + ABID97_RS04050 0.77 -1.2 831,258 - ABID97_RS04050 0.78 -2.0 831,281 + ABID97_RS04050 0.81 +0.0 831,329 + ABID97_RS04050 0.86 +0.4 831,330 - ABID97_RS04050 0.86 +0.0
Or see this region's nucleotide sequence