Experiment: Plant outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03255 and ABID97_RS03260 overlap by 4 nucleotides ABID97_RS03260 and ABID97_RS03265 are separated by 22 nucleotides ABID97_RS03265 and ABID97_RS03270 are separated by 139 nucleotides
ABID97_RS03255: ABID97_RS03255 - 3-keto-5-aminohexanoate cleavage protein, at 659,205 to 660,092
_RS03255
ABID97_RS03260: ABID97_RS03260 - SDR family oxidoreductase, at 660,089 to 660,853
_RS03260
ABID97_RS03265: ABID97_RS03265 - dioxygenase, at 660,876 to 661,742
_RS03265
ABID97_RS03270: ABID97_RS03270 - LacI family DNA-binding transcriptional regulator, at 661,882 to 662,913
_RS03270
Position (kb) 660
661
662 Strain fitness (log2 ratio) -1
0
1 at 660.780 kb on + strand at 660.931 kb on + strand at 660.931 kb on + strand at 660.931 kb on + strand at 661.268 kb on - strand, within ABID97_RS03265 at 662.560 kb on + strand, within ABID97_RS03270 at 662.561 kb on - strand, within ABID97_RS03270 at 662.561 kb on - strand, within ABID97_RS03270 at 662.561 kb on - strand, within ABID97_RS03270 at 662.708 kb on - strand, within ABID97_RS03270
Per-strain Table
Position Strand Gene LocusTag Fraction Plant outgrowth control remove 660,780 + +0.1 660,931 + +0.3 660,931 + +0.0 660,931 + +0.3 661,268 - ABID97_RS03265 0.45 +0.8 662,560 + ABID97_RS03270 0.66 +0.4 662,561 - ABID97_RS03270 0.66 -1.3 662,561 - ABID97_RS03270 0.66 -0.5 662,561 - ABID97_RS03270 0.66 -0.4 662,708 - ABID97_RS03270 0.80 -0.4
Or see this region's nucleotide sequence