Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02505

Experiment: Plant outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02500 and ABID97_RS02505 are separated by 9 nucleotidesABID97_RS02505 and ABID97_RS02510 are separated by 164 nucleotides ABID97_RS02500: ABID97_RS02500 - DUF4178 domain-containing protein, at 508,716 to 510,194 _RS02500 ABID97_RS02505: ABID97_RS02505 - SPFH domain-containing protein, at 510,204 to 511,253 _RS02505 ABID97_RS02510: ABID97_RS02510 - NADP-dependent malic enzyme, at 511,418 to 513,760 _RS02510 Position (kb) 510 511 512Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 509.248 kb on + strand, within ABID97_RS02500at 509.248 kb on + strand, within ABID97_RS02500at 509.248 kb on + strand, within ABID97_RS02500at 509.248 kb on + strand, within ABID97_RS02500at 509.248 kb on + strand, within ABID97_RS02500at 509.248 kb on + strand, within ABID97_RS02500at 509.249 kb on - strand, within ABID97_RS02500at 509.257 kb on + strand, within ABID97_RS02500at 509.257 kb on + strand, within ABID97_RS02500at 509.258 kb on - strand, within ABID97_RS02500at 509.258 kb on - strand, within ABID97_RS02500at 509.605 kb on + strand, within ABID97_RS02500at 509.605 kb on + strand, within ABID97_RS02500at 509.629 kb on + strand, within ABID97_RS02500at 509.629 kb on + strand, within ABID97_RS02500at 509.629 kb on + strand, within ABID97_RS02500at 509.761 kb on + strand, within ABID97_RS02500at 509.761 kb on + strand, within ABID97_RS02500at 509.761 kb on + strand, within ABID97_RS02500at 509.761 kb on + strand, within ABID97_RS02500at 509.762 kb on - strand, within ABID97_RS02500at 509.762 kb on - strand, within ABID97_RS02500at 509.762 kb on - strand, within ABID97_RS02500at 509.854 kb on + strand, within ABID97_RS02500at 509.854 kb on + strand, within ABID97_RS02500at 509.854 kb on + strand, within ABID97_RS02500at 509.854 kb on + strand, within ABID97_RS02500at 509.854 kb on + strand, within ABID97_RS02500at 509.854 kb on + strand, within ABID97_RS02500at 509.854 kb on + strand, within ABID97_RS02500at 509.855 kb on - strand, within ABID97_RS02500at 509.855 kb on - strand, within ABID97_RS02500at 509.855 kb on - strand, within ABID97_RS02500at 509.941 kb on + strand, within ABID97_RS02500at 509.942 kb on - strand, within ABID97_RS02500at 510.163 kb on + strandat 510.205 kb on + strandat 510.205 kb on + strandat 510.205 kb on + strandat 510.205 kb on + strandat 510.205 kb on + strandat 510.205 kb on + strandat 510.205 kb on + strandat 510.206 kb on - strandat 510.206 kb on - strandat 510.206 kb on - strandat 510.206 kb on - strandat 510.206 kb on - strandat 510.206 kb on - strandat 510.206 kb on - strandat 510.206 kb on - strandat 510.514 kb on + strand, within ABID97_RS02505at 510.796 kb on + strand, within ABID97_RS02505at 510.796 kb on + strand, within ABID97_RS02505at 510.796 kb on + strand, within ABID97_RS02505at 510.796 kb on + strand, within ABID97_RS02505at 510.796 kb on + strand, within ABID97_RS02505at 510.796 kb on + strand, within ABID97_RS02505at 510.796 kb on + strand, within ABID97_RS02505at 510.796 kb on + strand, within ABID97_RS02505at 510.796 kb on + strand, within ABID97_RS02505at 510.796 kb on + strand, within ABID97_RS02505at 510.797 kb on - strand, within ABID97_RS02505at 510.797 kb on - strand, within ABID97_RS02505at 510.797 kb on - strand, within ABID97_RS02505at 510.797 kb on - strand, within ABID97_RS02505at 510.797 kb on - strand, within ABID97_RS02505at 510.859 kb on + strand, within ABID97_RS02505at 510.859 kb on + strand, within ABID97_RS02505at 510.859 kb on + strand, within ABID97_RS02505at 510.859 kb on + strand, within ABID97_RS02505at 510.859 kb on + strand, within ABID97_RS02505at 510.860 kb on - strand, within ABID97_RS02505at 510.860 kb on - strand, within ABID97_RS02505at 510.860 kb on - strand, within ABID97_RS02505at 510.860 kb on - strand, within ABID97_RS02505at 510.860 kb on - strand, within ABID97_RS02505at 510.967 kb on + strand, within ABID97_RS02505at 510.967 kb on + strand, within ABID97_RS02505at 510.968 kb on - strand, within ABID97_RS02505at 510.968 kb on - strand, within ABID97_RS02505at 510.968 kb on - strand, within ABID97_RS02505at 510.968 kb on - strand, within ABID97_RS02505at 510.968 kb on - strand, within ABID97_RS02505at 510.968 kb on - strand, within ABID97_RS02505at 511.018 kb on + strand, within ABID97_RS02505at 511.018 kb on + strand, within ABID97_RS02505at 511.018 kb on + strand, within ABID97_RS02505at 511.019 kb on - strand, within ABID97_RS02505at 511.019 kb on - strand, within ABID97_RS02505at 511.019 kb on - strand, within ABID97_RS02505at 511.054 kb on + strand, within ABID97_RS02505at 511.054 kb on + strand, within ABID97_RS02505at 511.054 kb on + strand, within ABID97_RS02505at 511.054 kb on + strand, within ABID97_RS02505at 511.054 kb on + strand, within ABID97_RS02505at 511.055 kb on - strand, within ABID97_RS02505at 511.055 kb on - strand, within ABID97_RS02505at 511.055 kb on - strand, within ABID97_RS02505at 511.284 kb on + strandat 511.284 kb on + strandat 511.284 kb on + strandat 511.284 kb on + strandat 511.284 kb on + strandat 511.284 kb on + strandat 511.284 kb on + strandat 511.284 kb on + strandat 511.284 kb on + strandat 511.285 kb on - strandat 511.285 kb on - strandat 511.285 kb on - strandat 511.285 kb on - strandat 511.285 kb on - strandat 511.285 kb on - strandat 511.285 kb on - strandat 511.285 kb on - strandat 511.285 kb on - strandat 511.285 kb on - strandat 511.288 kb on + strandat 511.288 kb on + strandat 511.288 kb on + strandat 511.288 kb on + strandat 511.288 kb on + strandat 511.288 kb on + strandat 511.288 kb on + strandat 511.289 kb on - strandat 511.289 kb on - strandat 511.289 kb on - strandat 511.289 kb on - strandat 511.289 kb on - strandat 511.289 kb on - strandat 511.289 kb on - strandat 511.331 kb on + strandat 511.351 kb on + strandat 511.351 kb on + strandat 511.373 kb on + strandat 511.374 kb on - strandat 511.374 kb on - strandat 511.493 kb on + strandat 511.494 kb on - strandat 511.494 kb on - strandat 511.574 kb on + strandat 511.575 kb on - strandat 511.637 kb on + strandat 511.638 kb on - strandat 511.638 kb on - strandat 511.638 kb on - strandat 511.638 kb on - strandat 511.638 kb on - strandat 511.892 kb on + strand, within ABID97_RS02510at 511.892 kb on + strand, within ABID97_RS02510at 511.892 kb on + strand, within ABID97_RS02510at 511.892 kb on + strand, within ABID97_RS02510at 511.892 kb on + strand, within ABID97_RS02510at 511.892 kb on + strand, within ABID97_RS02510at 511.892 kb on + strand, within ABID97_RS02510at 511.893 kb on - strand, within ABID97_RS02510at 511.893 kb on - strand, within ABID97_RS02510at 511.893 kb on - strand, within ABID97_RS02510at 511.893 kb on - strand, within ABID97_RS02510at 511.893 kb on - strand, within ABID97_RS02510at 512.135 kb on + strand, within ABID97_RS02510at 512.135 kb on + strand, within ABID97_RS02510at 512.135 kb on + strand, within ABID97_RS02510at 512.136 kb on - strand, within ABID97_RS02510at 512.136 kb on - strand, within ABID97_RS02510at 512.177 kb on + strand, within ABID97_RS02510at 512.177 kb on + strand, within ABID97_RS02510at 512.177 kb on + strand, within ABID97_RS02510at 512.177 kb on + strand, within ABID97_RS02510at 512.177 kb on + strand, within ABID97_RS02510at 512.177 kb on + strand, within ABID97_RS02510at 512.177 kb on + strand, within ABID97_RS02510at 512.177 kb on + strand, within ABID97_RS02510at 512.177 kb on + strand, within ABID97_RS02510at 512.177 kb on + strand, within ABID97_RS02510at 512.177 kb on + strand, within ABID97_RS02510at 512.177 kb on + strand, within ABID97_RS02510at 512.177 kb on + strand, within ABID97_RS02510at 512.178 kb on - strand, within ABID97_RS02510at 512.178 kb on - strand, within ABID97_RS02510at 512.178 kb on - strand, within ABID97_RS02510at 512.178 kb on - strand, within ABID97_RS02510at 512.178 kb on - strand, within ABID97_RS02510at 512.178 kb on - strand, within ABID97_RS02510at 512.178 kb on - strand, within ABID97_RS02510at 512.178 kb on - strand, within ABID97_RS02510at 512.178 kb on - strand, within ABID97_RS02510at 512.178 kb on - strand, within ABID97_RS02510at 512.178 kb on - strand, within ABID97_RS02510at 512.178 kb on - strand, within ABID97_RS02510

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant outgrowth control
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509,248 + ABID97_RS02500 0.36 +0.4
509,248 + ABID97_RS02500 0.36 +0.8
509,248 + ABID97_RS02500 0.36 -0.4
509,248 + ABID97_RS02500 0.36 +2.3
509,248 + ABID97_RS02500 0.36 +0.1
509,248 + ABID97_RS02500 0.36 +1.0
509,249 - ABID97_RS02500 0.36 +0.6
509,257 + ABID97_RS02500 0.37 +1.1
509,257 + ABID97_RS02500 0.37 +0.3
509,258 - ABID97_RS02500 0.37 -0.2
509,258 - ABID97_RS02500 0.37 +0.5
509,605 + ABID97_RS02500 0.60 -0.0
509,605 + ABID97_RS02500 0.60 +0.6
509,629 + ABID97_RS02500 0.62 +0.1
509,629 + ABID97_RS02500 0.62 -0.2
509,629 + ABID97_RS02500 0.62 +0.3
509,761 + ABID97_RS02500 0.71 -0.4
509,761 + ABID97_RS02500 0.71 -0.7
509,761 + ABID97_RS02500 0.71 +0.2
509,761 + ABID97_RS02500 0.71 +0.7
509,762 - ABID97_RS02500 0.71 -0.0
509,762 - ABID97_RS02500 0.71 +1.7
509,762 - ABID97_RS02500 0.71 +0.2
509,854 + ABID97_RS02500 0.77 +0.3
509,854 + ABID97_RS02500 0.77 -0.1
509,854 + ABID97_RS02500 0.77 -0.0
509,854 + ABID97_RS02500 0.77 +0.4
509,854 + ABID97_RS02500 0.77 +0.1
509,854 + ABID97_RS02500 0.77 +0.2
509,854 + ABID97_RS02500 0.77 +0.2
509,855 - ABID97_RS02500 0.77 +0.8
509,855 - ABID97_RS02500 0.77 -0.4
509,855 - ABID97_RS02500 0.77 +0.3
509,941 + ABID97_RS02500 0.83 +1.3
509,942 - ABID97_RS02500 0.83 +0.1
510,163 + -0.3
510,205 + +0.3
510,205 + +0.2
510,205 + +2.0
510,205 + +0.3
510,205 + +0.4
510,205 + -0.3
510,205 + -0.4
510,206 - -0.2
510,206 - -0.1
510,206 - +0.0
510,206 - +0.5
510,206 - +0.0
510,206 - -0.5
510,206 - -0.3
510,206 - +0.0
510,514 + ABID97_RS02505 0.30 -0.3
510,796 + ABID97_RS02505 0.56 -1.0
510,796 + ABID97_RS02505 0.56 -0.2
510,796 + ABID97_RS02505 0.56 -0.0
510,796 + ABID97_RS02505 0.56 -0.1
510,796 + ABID97_RS02505 0.56 +0.9
510,796 + ABID97_RS02505 0.56 +0.9
510,796 + ABID97_RS02505 0.56 +0.4
510,796 + ABID97_RS02505 0.56 -0.6
510,796 + ABID97_RS02505 0.56 +0.2
510,796 + ABID97_RS02505 0.56 -0.2
510,797 - ABID97_RS02505 0.56 +0.6
510,797 - ABID97_RS02505 0.56 -0.2
510,797 - ABID97_RS02505 0.56 +0.7
510,797 - ABID97_RS02505 0.56 +0.2
510,797 - ABID97_RS02505 0.56 +0.6
510,859 + ABID97_RS02505 0.62 +0.0
510,859 + ABID97_RS02505 0.62 -0.6
510,859 + ABID97_RS02505 0.62 +0.3
510,859 + ABID97_RS02505 0.62 +0.5
510,859 + ABID97_RS02505 0.62 +1.0
510,860 - ABID97_RS02505 0.62 +0.5
510,860 - ABID97_RS02505 0.62 +0.0
510,860 - ABID97_RS02505 0.62 +0.7
510,860 - ABID97_RS02505 0.62 +0.2
510,860 - ABID97_RS02505 0.62 +0.5
510,967 + ABID97_RS02505 0.73 +1.0
510,967 + ABID97_RS02505 0.73 -0.6
510,968 - ABID97_RS02505 0.73 +0.1
510,968 - ABID97_RS02505 0.73 +0.5
510,968 - ABID97_RS02505 0.73 +1.6
510,968 - ABID97_RS02505 0.73 -0.0
510,968 - ABID97_RS02505 0.73 -0.1
510,968 - ABID97_RS02505 0.73 +0.6
511,018 + ABID97_RS02505 0.78 +1.6
511,018 + ABID97_RS02505 0.78 -0.8
511,018 + ABID97_RS02505 0.78 +0.2
511,019 - ABID97_RS02505 0.78 +0.9
511,019 - ABID97_RS02505 0.78 +0.1
511,019 - ABID97_RS02505 0.78 +0.4
511,054 + ABID97_RS02505 0.81 +0.0
511,054 + ABID97_RS02505 0.81 +0.1
511,054 + ABID97_RS02505 0.81 +0.0
511,054 + ABID97_RS02505 0.81 +0.8
511,054 + ABID97_RS02505 0.81 +0.0
511,055 - ABID97_RS02505 0.81 +0.3
511,055 - ABID97_RS02505 0.81 +0.2
511,055 - ABID97_RS02505 0.81 +0.1
511,284 + -0.1
511,284 + +0.6
511,284 + +0.1
511,284 + +1.6
511,284 + -3.3
511,284 + -0.0
511,284 + +0.2
511,284 + -0.0
511,284 + -0.0
511,285 - +0.3
511,285 - -0.6
511,285 - -0.3
511,285 - -0.2
511,285 - -0.3
511,285 - -1.6
511,285 - +0.0
511,285 - +0.1
511,285 - +0.8
511,285 - +0.8
511,288 + -0.2
511,288 + -0.1
511,288 + +0.4
511,288 + +0.9
511,288 + +0.2
511,288 + +0.6
511,288 + -0.5
511,289 - +0.0
511,289 - +1.3
511,289 - -0.6
511,289 - -0.0
511,289 - +0.3
511,289 - -0.3
511,289 - +0.7
511,331 + -0.2
511,351 + +1.0
511,351 + +0.3
511,373 + +0.3
511,374 - -0.0
511,374 - -0.1
511,493 + -1.0
511,494 - -1.2
511,494 - -1.1
511,574 + -1.2
511,575 - -1.2
511,637 + -0.9
511,638 - -1.3
511,638 - +0.4
511,638 - -1.1
511,638 - -0.4
511,638 - -1.6
511,892 + ABID97_RS02510 0.20 -3.5
511,892 + ABID97_RS02510 0.20 -1.6
511,892 + ABID97_RS02510 0.20 -0.2
511,892 + ABID97_RS02510 0.20 -1.0
511,892 + ABID97_RS02510 0.20 -1.1
511,892 + ABID97_RS02510 0.20 -0.9
511,892 + ABID97_RS02510 0.20 -0.9
511,893 - ABID97_RS02510 0.20 -4.3
511,893 - ABID97_RS02510 0.20 -0.7
511,893 - ABID97_RS02510 0.20 -1.8
511,893 - ABID97_RS02510 0.20 -0.4
511,893 - ABID97_RS02510 0.20 -0.8
512,135 + ABID97_RS02510 0.31 -0.0
512,135 + ABID97_RS02510 0.31 -0.5
512,135 + ABID97_RS02510 0.31 -0.6
512,136 - ABID97_RS02510 0.31 -1.5
512,136 - ABID97_RS02510 0.31 +0.4
512,177 + ABID97_RS02510 0.32 -2.6
512,177 + ABID97_RS02510 0.32 -1.9
512,177 + ABID97_RS02510 0.32 -0.7
512,177 + ABID97_RS02510 0.32 -1.3
512,177 + ABID97_RS02510 0.32 -0.6
512,177 + ABID97_RS02510 0.32 -2.6
512,177 + ABID97_RS02510 0.32 -0.5
512,177 + ABID97_RS02510 0.32 -1.9
512,177 + ABID97_RS02510 0.32 -1.8
512,177 + ABID97_RS02510 0.32 -1.4
512,177 + ABID97_RS02510 0.32 +1.2
512,177 + ABID97_RS02510 0.32 -1.5
512,177 + ABID97_RS02510 0.32 +0.1
512,178 - ABID97_RS02510 0.32 -1.0
512,178 - ABID97_RS02510 0.32 -1.4
512,178 - ABID97_RS02510 0.32 -1.8
512,178 - ABID97_RS02510 0.32 -1.2
512,178 - ABID97_RS02510 0.32 -0.9
512,178 - ABID97_RS02510 0.32 -0.3
512,178 - ABID97_RS02510 0.32 -0.0
512,178 - ABID97_RS02510 0.32 -2.0
512,178 - ABID97_RS02510 0.32 -2.6
512,178 - ABID97_RS02510 0.32 -3.9
512,178 - ABID97_RS02510 0.32 -1.1
512,178 - ABID97_RS02510 0.32 -0.6

Or see this region's nucleotide sequence