Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02060

Experiment: Plant outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02055 and ABID97_RS02060 are separated by 80 nucleotidesABID97_RS02060 and ABID97_RS02065 are separated by 34 nucleotidesABID97_RS02065 and ABID97_RS02070 are separated by 3 nucleotidesABID97_RS02070 and ABID97_RS02075 are separated by 9 nucleotides ABID97_RS02055: ABID97_RS02055 - PepSY-associated TM helix domain-containing protein, at 412,860 to 413,996 _RS02055 ABID97_RS02060: ABID97_RS02060 - TonB-dependent siderophore receptor, at 414,077 to 416,209 _RS02060 ABID97_RS02065: ABID97_RS02065 - YaeQ family protein, at 416,244 to 416,804 _RS02065 ABID97_RS02070: ABID97_RS02070 - DUF2007 domain-containing protein, at 416,808 to 417,113 _RS02070 ABID97_RS02075: ABID97_RS02075 - DUF3717 domain-containing protein, at 417,123 to 417,587 _RS02075 Position (kb) 414 415 416 417Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 413.145 kb on + strand, within ABID97_RS02055at 413.145 kb on + strand, within ABID97_RS02055at 413.145 kb on + strand, within ABID97_RS02055at 413.145 kb on + strand, within ABID97_RS02055at 413.145 kb on + strand, within ABID97_RS02055at 413.145 kb on + strand, within ABID97_RS02055at 413.146 kb on - strand, within ABID97_RS02055at 413.146 kb on - strand, within ABID97_RS02055at 413.146 kb on - strand, within ABID97_RS02055at 413.146 kb on - strand, within ABID97_RS02055at 413.146 kb on - strand, within ABID97_RS02055at 413.146 kb on - strand, within ABID97_RS02055at 413.146 kb on - strand, within ABID97_RS02055at 413.168 kb on + strand, within ABID97_RS02055at 413.168 kb on + strand, within ABID97_RS02055at 413.169 kb on - strand, within ABID97_RS02055at 413.169 kb on - strand, within ABID97_RS02055at 413.169 kb on - strand, within ABID97_RS02055at 413.169 kb on - strand, within ABID97_RS02055at 413.169 kb on - strand, within ABID97_RS02055at 413.169 kb on - strand, within ABID97_RS02055at 413.175 kb on + strand, within ABID97_RS02055at 413.232 kb on + strand, within ABID97_RS02055at 413.232 kb on + strand, within ABID97_RS02055at 413.232 kb on + strand, within ABID97_RS02055at 413.233 kb on - strand, within ABID97_RS02055at 413.233 kb on - strand, within ABID97_RS02055at 413.313 kb on + strand, within ABID97_RS02055at 413.314 kb on - strand, within ABID97_RS02055at 413.314 kb on - strand, within ABID97_RS02055at 413.314 kb on - strand, within ABID97_RS02055at 413.314 kb on - strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.482 kb on - strand, within ABID97_RS02055at 413.482 kb on - strand, within ABID97_RS02055at 413.482 kb on - strand, within ABID97_RS02055at 413.482 kb on - strand, within ABID97_RS02055at 413.482 kb on - strand, within ABID97_RS02055at 413.482 kb on - strand, within ABID97_RS02055at 413.482 kb on - strand, within ABID97_RS02055at 413.482 kb on - strand, within ABID97_RS02055at 413.482 kb on - strand, within ABID97_RS02055at 413.482 kb on - strand, within ABID97_RS02055at 413.482 kb on - strand, within ABID97_RS02055at 413.643 kb on + strand, within ABID97_RS02055at 413.643 kb on + strand, within ABID97_RS02055at 413.643 kb on + strand, within ABID97_RS02055at 413.644 kb on - strand, within ABID97_RS02055at 413.644 kb on - strand, within ABID97_RS02055at 413.644 kb on - strand, within ABID97_RS02055at 413.644 kb on - strand, within ABID97_RS02055at 413.817 kb on + strand, within ABID97_RS02055at 413.817 kb on + strand, within ABID97_RS02055at 414.032 kb on - strandat 414.032 kb on - strandat 414.032 kb on - strandat 414.032 kb on - strandat 414.032 kb on - strandat 414.032 kb on - strandat 414.039 kb on + strandat 414.040 kb on - strandat 414.040 kb on - strandat 414.425 kb on + strand, within ABID97_RS02060at 414.664 kb on + strand, within ABID97_RS02060at 414.698 kb on + strand, within ABID97_RS02060at 414.698 kb on + strand, within ABID97_RS02060at 414.941 kb on + strand, within ABID97_RS02060at 414.942 kb on - strand, within ABID97_RS02060at 414.942 kb on - strand, within ABID97_RS02060at 414.986 kb on + strand, within ABID97_RS02060at 414.986 kb on + strand, within ABID97_RS02060at 414.986 kb on + strand, within ABID97_RS02060at 414.987 kb on - strand, within ABID97_RS02060at 414.987 kb on - strand, within ABID97_RS02060at 414.987 kb on - strand, within ABID97_RS02060at 414.987 kb on - strand, within ABID97_RS02060at 415.011 kb on - strand, within ABID97_RS02060at 415.011 kb on - strand, within ABID97_RS02060at 415.076 kb on + strand, within ABID97_RS02060at 415.076 kb on + strand, within ABID97_RS02060at 415.076 kb on + strand, within ABID97_RS02060at 415.077 kb on - strand, within ABID97_RS02060at 415.077 kb on - strand, within ABID97_RS02060at 415.077 kb on - strand, within ABID97_RS02060at 415.077 kb on - strand, within ABID97_RS02060at 415.077 kb on - strand, within ABID97_RS02060at 415.160 kb on + strand, within ABID97_RS02060at 415.202 kb on + strand, within ABID97_RS02060at 415.292 kb on + strand, within ABID97_RS02060at 415.292 kb on + strand, within ABID97_RS02060at 415.293 kb on - strand, within ABID97_RS02060at 415.293 kb on - strand, within ABID97_RS02060at 415.377 kb on - strand, within ABID97_RS02060at 415.377 kb on - strand, within ABID97_RS02060at 415.377 kb on - strand, within ABID97_RS02060at 415.377 kb on - strand, within ABID97_RS02060at 415.377 kb on - strand, within ABID97_RS02060at 415.460 kb on + strand, within ABID97_RS02060at 415.460 kb on + strand, within ABID97_RS02060at 415.461 kb on - strand, within ABID97_RS02060at 415.523 kb on + strand, within ABID97_RS02060at 415.524 kb on - strand, within ABID97_RS02060at 415.524 kb on - strand, within ABID97_RS02060at 415.578 kb on - strand, within ABID97_RS02060at 415.595 kb on + strand, within ABID97_RS02060at 415.595 kb on + strand, within ABID97_RS02060at 415.595 kb on + strand, within ABID97_RS02060at 415.595 kb on + strand, within ABID97_RS02060at 415.595 kb on + strand, within ABID97_RS02060at 415.799 kb on + strand, within ABID97_RS02060at 415.805 kb on + strand, within ABID97_RS02060at 415.805 kb on + strand, within ABID97_RS02060at 415.805 kb on + strand, within ABID97_RS02060at 415.805 kb on + strand, within ABID97_RS02060at 415.806 kb on - strand, within ABID97_RS02060at 415.806 kb on - strand, within ABID97_RS02060at 415.806 kb on - strand, within ABID97_RS02060at 415.859 kb on + strand, within ABID97_RS02060at 415.860 kb on - strand, within ABID97_RS02060at 415.928 kb on + strand, within ABID97_RS02060at 415.979 kb on + strand, within ABID97_RS02060at 415.979 kb on + strand, within ABID97_RS02060at 415.979 kb on + strand, within ABID97_RS02060at 415.980 kb on - strand, within ABID97_RS02060at 416.027 kb on + strandat 416.124 kb on - strandat 416.124 kb on - strandat 416.124 kb on - strandat 416.127 kb on - strandat 416.159 kb on + strandat 416.159 kb on + strandat 416.160 kb on - strandat 416.160 kb on - strandat 416.183 kb on + strandat 416.184 kb on - strandat 416.184 kb on - strandat 416.229 kb on + strandat 416.229 kb on + strandat 416.230 kb on - strandat 416.230 kb on - strandat 416.230 kb on - strandat 416.230 kb on - strandat 416.308 kb on - strand, within ABID97_RS02065at 416.583 kb on + strand, within ABID97_RS02065at 416.583 kb on + strand, within ABID97_RS02065at 416.583 kb on + strand, within ABID97_RS02065at 416.584 kb on - strand, within ABID97_RS02065at 416.584 kb on - strand, within ABID97_RS02065at 416.584 kb on - strand, within ABID97_RS02065at 416.584 kb on - strand, within ABID97_RS02065at 416.661 kb on + strand, within ABID97_RS02065at 416.661 kb on + strand, within ABID97_RS02065at 416.662 kb on - strand, within ABID97_RS02065at 416.802 kb on + strandat 416.802 kb on + strandat 416.803 kb on - strandat 416.803 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant outgrowth control
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413,145 + ABID97_RS02055 0.25 -0.2
413,145 + ABID97_RS02055 0.25 -0.2
413,145 + ABID97_RS02055 0.25 -0.6
413,145 + ABID97_RS02055 0.25 -0.3
413,145 + ABID97_RS02055 0.25 -1.2
413,145 + ABID97_RS02055 0.25 -1.3
413,146 - ABID97_RS02055 0.25 -0.9
413,146 - ABID97_RS02055 0.25 -0.0
413,146 - ABID97_RS02055 0.25 +0.2
413,146 - ABID97_RS02055 0.25 -1.0
413,146 - ABID97_RS02055 0.25 -0.6
413,146 - ABID97_RS02055 0.25 -0.4
413,146 - ABID97_RS02055 0.25 -1.2
413,168 + ABID97_RS02055 0.27 -0.8
413,168 + ABID97_RS02055 0.27 -2.2
413,169 - ABID97_RS02055 0.27 -1.5
413,169 - ABID97_RS02055 0.27 -3.3
413,169 - ABID97_RS02055 0.27 -3.1
413,169 - ABID97_RS02055 0.27 -0.6
413,169 - ABID97_RS02055 0.27 -2.7
413,169 - ABID97_RS02055 0.27 -1.6
413,175 + ABID97_RS02055 0.28 -1.3
413,232 + ABID97_RS02055 0.33 -0.1
413,232 + ABID97_RS02055 0.33 +2.4
413,232 + ABID97_RS02055 0.33 -3.2
413,233 - ABID97_RS02055 0.33 -0.2
413,233 - ABID97_RS02055 0.33 -0.6
413,313 + ABID97_RS02055 0.40 -0.6
413,314 - ABID97_RS02055 0.40 -0.3
413,314 - ABID97_RS02055 0.40 -0.5
413,314 - ABID97_RS02055 0.40 -2.0
413,314 - ABID97_RS02055 0.40 -1.8
413,481 + ABID97_RS02055 0.55 -0.0
413,481 + ABID97_RS02055 0.55 -1.5
413,481 + ABID97_RS02055 0.55 -0.5
413,481 + ABID97_RS02055 0.55 -0.3
413,481 + ABID97_RS02055 0.55 +0.2
413,481 + ABID97_RS02055 0.55 -1.5
413,481 + ABID97_RS02055 0.55 +0.3
413,481 + ABID97_RS02055 0.55 -0.6
413,481 + ABID97_RS02055 0.55 +0.5
413,481 + ABID97_RS02055 0.55 +0.7
413,481 + ABID97_RS02055 0.55 -0.6
413,481 + ABID97_RS02055 0.55 -0.3
413,481 + ABID97_RS02055 0.55 -0.8
413,481 + ABID97_RS02055 0.55 -2.9
413,481 + ABID97_RS02055 0.55 +0.9
413,482 - ABID97_RS02055 0.55 -0.9
413,482 - ABID97_RS02055 0.55 -1.3
413,482 - ABID97_RS02055 0.55 -0.9
413,482 - ABID97_RS02055 0.55 -2.3
413,482 - ABID97_RS02055 0.55 -0.3
413,482 - ABID97_RS02055 0.55 -2.7
413,482 - ABID97_RS02055 0.55 -1.3
413,482 - ABID97_RS02055 0.55 +0.2
413,482 - ABID97_RS02055 0.55 +0.2
413,482 - ABID97_RS02055 0.55 -2.0
413,482 - ABID97_RS02055 0.55 -0.6
413,643 + ABID97_RS02055 0.69 +0.3
413,643 + ABID97_RS02055 0.69 -0.9
413,643 + ABID97_RS02055 0.69 -0.1
413,644 - ABID97_RS02055 0.69 -0.8
413,644 - ABID97_RS02055 0.69 -0.7
413,644 - ABID97_RS02055 0.69 -0.4
413,644 - ABID97_RS02055 0.69 +0.5
413,817 + ABID97_RS02055 0.84 +0.5
413,817 + ABID97_RS02055 0.84 -0.5
414,032 - -2.0
414,032 - -0.5
414,032 - -0.4
414,032 - -0.5
414,032 - -0.9
414,032 - +0.8
414,039 + -0.8
414,040 - -0.9
414,040 - -1.0
414,425 + ABID97_RS02060 0.16 -2.6
414,664 + ABID97_RS02060 0.28 -1.0
414,698 + ABID97_RS02060 0.29 -1.8
414,698 + ABID97_RS02060 0.29 -3.2
414,941 + ABID97_RS02060 0.41 -3.3
414,942 - ABID97_RS02060 0.41 -4.9
414,942 - ABID97_RS02060 0.41 -2.3
414,986 + ABID97_RS02060 0.43 -2.7
414,986 + ABID97_RS02060 0.43 -3.9
414,986 + ABID97_RS02060 0.43 -2.8
414,987 - ABID97_RS02060 0.43 -1.6
414,987 - ABID97_RS02060 0.43 -2.3
414,987 - ABID97_RS02060 0.43 -3.8
414,987 - ABID97_RS02060 0.43 -2.0
415,011 - ABID97_RS02060 0.44 -0.0
415,011 - ABID97_RS02060 0.44 -1.8
415,076 + ABID97_RS02060 0.47 -3.8
415,076 + ABID97_RS02060 0.47 -1.3
415,076 + ABID97_RS02060 0.47 -3.8
415,077 - ABID97_RS02060 0.47 -1.8
415,077 - ABID97_RS02060 0.47 -1.6
415,077 - ABID97_RS02060 0.47 -4.4
415,077 - ABID97_RS02060 0.47 -1.8
415,077 - ABID97_RS02060 0.47 -4.2
415,160 + ABID97_RS02060 0.51 -3.0
415,202 + ABID97_RS02060 0.53 -0.3
415,292 + ABID97_RS02060 0.57 -3.7
415,292 + ABID97_RS02060 0.57 -3.4
415,293 - ABID97_RS02060 0.57 -0.0
415,293 - ABID97_RS02060 0.57 -4.4
415,377 - ABID97_RS02060 0.61 -3.4
415,377 - ABID97_RS02060 0.61 -2.0
415,377 - ABID97_RS02060 0.61 -2.8
415,377 - ABID97_RS02060 0.61 -1.0
415,377 - ABID97_RS02060 0.61 -2.7
415,460 + ABID97_RS02060 0.65 -0.0
415,460 + ABID97_RS02060 0.65 -3.1
415,461 - ABID97_RS02060 0.65 +1.0
415,523 + ABID97_RS02060 0.68 -2.6
415,524 - ABID97_RS02060 0.68 -2.0
415,524 - ABID97_RS02060 0.68 -2.9
415,578 - ABID97_RS02060 0.70 -2.3
415,595 + ABID97_RS02060 0.71 -3.4
415,595 + ABID97_RS02060 0.71 -1.4
415,595 + ABID97_RS02060 0.71 -2.8
415,595 + ABID97_RS02060 0.71 +1.0
415,595 + ABID97_RS02060 0.71 -3.5
415,799 + ABID97_RS02060 0.81 -4.1
415,805 + ABID97_RS02060 0.81 -2.8
415,805 + ABID97_RS02060 0.81 -3.3
415,805 + ABID97_RS02060 0.81 -1.7
415,805 + ABID97_RS02060 0.81 -3.7
415,806 - ABID97_RS02060 0.81 -2.6
415,806 - ABID97_RS02060 0.81 -2.9
415,806 - ABID97_RS02060 0.81 -4.4
415,859 + ABID97_RS02060 0.84 -3.1
415,860 - ABID97_RS02060 0.84 -5.1
415,928 + ABID97_RS02060 0.87 -3.2
415,979 + ABID97_RS02060 0.89 -3.7
415,979 + ABID97_RS02060 0.89 -4.3
415,979 + ABID97_RS02060 0.89 -3.9
415,980 - ABID97_RS02060 0.89 -3.7
416,027 + -1.8
416,124 - -2.0
416,124 - +0.4
416,124 - -1.8
416,127 - -3.0
416,159 + -4.0
416,159 + -4.1
416,160 - -4.3
416,160 - -4.1
416,183 + -1.6
416,184 - -3.4
416,184 - -4.5
416,229 + +0.5
416,229 + -0.0
416,230 - -0.2
416,230 - -0.3
416,230 - -1.9
416,230 - -0.4
416,308 - ABID97_RS02065 0.11 -0.2
416,583 + ABID97_RS02065 0.60 +3.3
416,583 + ABID97_RS02065 0.60 -0.4
416,583 + ABID97_RS02065 0.60 +0.1
416,584 - ABID97_RS02065 0.61 +0.7
416,584 - ABID97_RS02065 0.61 -0.2
416,584 - ABID97_RS02065 0.61 +0.6
416,584 - ABID97_RS02065 0.61 +0.1
416,661 + ABID97_RS02065 0.74 +1.0
416,661 + ABID97_RS02065 0.74 +0.3
416,662 - ABID97_RS02065 0.75 +0.4
416,802 + -0.0
416,802 + -0.1
416,803 - +0.5
416,803 - -0.4

Or see this region's nucleotide sequence