Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02050

Experiment: Plant outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02045 and ABID97_RS02050 are separated by 118 nucleotidesABID97_RS02050 and ABID97_RS02055 are separated by 136 nucleotides ABID97_RS02045: ABID97_RS02045 - glutathione S-transferase N-terminal domain-containing protein, at 410,613 to 411,224 _RS02045 ABID97_RS02050: ABID97_RS02050 - adenylosuccinate lyase, at 411,343 to 412,723 _RS02050 ABID97_RS02055: ABID97_RS02055 - PepSY-associated TM helix domain-containing protein, at 412,860 to 413,996 _RS02055 Position (kb) 411 412 413Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 410.365 kb on + strandat 410.365 kb on + strandat 410.366 kb on - strandat 410.405 kb on - strandat 410.544 kb on + strandat 410.659 kb on + strandat 410.660 kb on - strandat 410.660 kb on - strandat 411.019 kb on + strand, within ABID97_RS02045at 411.019 kb on + strand, within ABID97_RS02045at 411.019 kb on + strand, within ABID97_RS02045at 411.020 kb on - strand, within ABID97_RS02045at 411.020 kb on - strand, within ABID97_RS02045at 411.148 kb on + strand, within ABID97_RS02045at 411.149 kb on - strand, within ABID97_RS02045at 411.193 kb on + strandat 411.193 kb on + strandat 411.193 kb on + strandat 411.193 kb on + strandat 411.193 kb on + strandat 411.193 kb on + strandat 411.194 kb on - strandat 411.194 kb on - strandat 411.194 kb on - strandat 411.194 kb on - strandat 411.194 kb on - strandat 411.194 kb on - strandat 411.249 kb on + strandat 412.714 kb on + strandat 412.842 kb on + strandat 412.842 kb on + strandat 412.843 kb on - strandat 412.843 kb on - strandat 412.843 kb on - strandat 413.145 kb on + strand, within ABID97_RS02055at 413.145 kb on + strand, within ABID97_RS02055at 413.145 kb on + strand, within ABID97_RS02055at 413.145 kb on + strand, within ABID97_RS02055at 413.145 kb on + strand, within ABID97_RS02055at 413.145 kb on + strand, within ABID97_RS02055at 413.146 kb on - strand, within ABID97_RS02055at 413.146 kb on - strand, within ABID97_RS02055at 413.146 kb on - strand, within ABID97_RS02055at 413.146 kb on - strand, within ABID97_RS02055at 413.146 kb on - strand, within ABID97_RS02055at 413.146 kb on - strand, within ABID97_RS02055at 413.146 kb on - strand, within ABID97_RS02055at 413.168 kb on + strand, within ABID97_RS02055at 413.168 kb on + strand, within ABID97_RS02055at 413.169 kb on - strand, within ABID97_RS02055at 413.169 kb on - strand, within ABID97_RS02055at 413.169 kb on - strand, within ABID97_RS02055at 413.169 kb on - strand, within ABID97_RS02055at 413.169 kb on - strand, within ABID97_RS02055at 413.169 kb on - strand, within ABID97_RS02055at 413.175 kb on + strand, within ABID97_RS02055at 413.232 kb on + strand, within ABID97_RS02055at 413.232 kb on + strand, within ABID97_RS02055at 413.232 kb on + strand, within ABID97_RS02055at 413.233 kb on - strand, within ABID97_RS02055at 413.233 kb on - strand, within ABID97_RS02055at 413.313 kb on + strand, within ABID97_RS02055at 413.314 kb on - strand, within ABID97_RS02055at 413.314 kb on - strand, within ABID97_RS02055at 413.314 kb on - strand, within ABID97_RS02055at 413.314 kb on - strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.481 kb on + strand, within ABID97_RS02055at 413.482 kb on - strand, within ABID97_RS02055at 413.482 kb on - strand, within ABID97_RS02055at 413.482 kb on - strand, within ABID97_RS02055at 413.482 kb on - strand, within ABID97_RS02055at 413.482 kb on - strand, within ABID97_RS02055at 413.482 kb on - strand, within ABID97_RS02055at 413.482 kb on - strand, within ABID97_RS02055at 413.482 kb on - strand, within ABID97_RS02055at 413.482 kb on - strand, within ABID97_RS02055at 413.482 kb on - strand, within ABID97_RS02055at 413.482 kb on - strand, within ABID97_RS02055at 413.643 kb on + strand, within ABID97_RS02055at 413.643 kb on + strand, within ABID97_RS02055at 413.643 kb on + strand, within ABID97_RS02055at 413.644 kb on - strand, within ABID97_RS02055at 413.644 kb on - strand, within ABID97_RS02055at 413.644 kb on - strand, within ABID97_RS02055at 413.644 kb on - strand, within ABID97_RS02055

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant outgrowth control
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410,365 + +0.5
410,365 + +0.4
410,366 - -1.6
410,405 - -0.2
410,544 + -0.4
410,659 + +0.3
410,660 - +0.4
410,660 - +0.5
411,019 + ABID97_RS02045 0.66 -0.6
411,019 + ABID97_RS02045 0.66 +0.5
411,019 + ABID97_RS02045 0.66 +0.0
411,020 - ABID97_RS02045 0.67 -0.3
411,020 - ABID97_RS02045 0.67 +0.7
411,148 + ABID97_RS02045 0.87 +0.1
411,149 - ABID97_RS02045 0.88 -0.4
411,193 + +1.0
411,193 + -0.2
411,193 + +0.1
411,193 + +0.9
411,193 + +0.4
411,193 + -0.1
411,194 - +0.2
411,194 - +0.1
411,194 - +0.4
411,194 - +0.0
411,194 - +0.3
411,194 - +0.0
411,249 + -0.7
412,714 + +0.6
412,842 + +0.9
412,842 + -0.6
412,843 - -1.3
412,843 - -1.2
412,843 - -1.0
413,145 + ABID97_RS02055 0.25 -0.2
413,145 + ABID97_RS02055 0.25 -0.2
413,145 + ABID97_RS02055 0.25 -0.6
413,145 + ABID97_RS02055 0.25 -0.3
413,145 + ABID97_RS02055 0.25 -1.2
413,145 + ABID97_RS02055 0.25 -1.3
413,146 - ABID97_RS02055 0.25 -0.9
413,146 - ABID97_RS02055 0.25 -0.0
413,146 - ABID97_RS02055 0.25 +0.2
413,146 - ABID97_RS02055 0.25 -1.0
413,146 - ABID97_RS02055 0.25 -0.6
413,146 - ABID97_RS02055 0.25 -0.4
413,146 - ABID97_RS02055 0.25 -1.2
413,168 + ABID97_RS02055 0.27 -0.8
413,168 + ABID97_RS02055 0.27 -2.2
413,169 - ABID97_RS02055 0.27 -1.5
413,169 - ABID97_RS02055 0.27 -3.3
413,169 - ABID97_RS02055 0.27 -3.1
413,169 - ABID97_RS02055 0.27 -0.6
413,169 - ABID97_RS02055 0.27 -2.7
413,169 - ABID97_RS02055 0.27 -1.6
413,175 + ABID97_RS02055 0.28 -1.3
413,232 + ABID97_RS02055 0.33 -0.1
413,232 + ABID97_RS02055 0.33 +2.4
413,232 + ABID97_RS02055 0.33 -3.2
413,233 - ABID97_RS02055 0.33 -0.2
413,233 - ABID97_RS02055 0.33 -0.6
413,313 + ABID97_RS02055 0.40 -0.6
413,314 - ABID97_RS02055 0.40 -0.3
413,314 - ABID97_RS02055 0.40 -0.5
413,314 - ABID97_RS02055 0.40 -2.0
413,314 - ABID97_RS02055 0.40 -1.8
413,481 + ABID97_RS02055 0.55 -0.0
413,481 + ABID97_RS02055 0.55 -1.5
413,481 + ABID97_RS02055 0.55 -0.5
413,481 + ABID97_RS02055 0.55 -0.3
413,481 + ABID97_RS02055 0.55 +0.2
413,481 + ABID97_RS02055 0.55 -1.5
413,481 + ABID97_RS02055 0.55 +0.3
413,481 + ABID97_RS02055 0.55 -0.6
413,481 + ABID97_RS02055 0.55 +0.5
413,481 + ABID97_RS02055 0.55 +0.7
413,481 + ABID97_RS02055 0.55 -0.6
413,481 + ABID97_RS02055 0.55 -0.3
413,481 + ABID97_RS02055 0.55 -0.8
413,481 + ABID97_RS02055 0.55 -2.9
413,481 + ABID97_RS02055 0.55 +0.9
413,482 - ABID97_RS02055 0.55 -0.9
413,482 - ABID97_RS02055 0.55 -1.3
413,482 - ABID97_RS02055 0.55 -0.9
413,482 - ABID97_RS02055 0.55 -2.3
413,482 - ABID97_RS02055 0.55 -0.3
413,482 - ABID97_RS02055 0.55 -2.7
413,482 - ABID97_RS02055 0.55 -1.3
413,482 - ABID97_RS02055 0.55 +0.2
413,482 - ABID97_RS02055 0.55 +0.2
413,482 - ABID97_RS02055 0.55 -2.0
413,482 - ABID97_RS02055 0.55 -0.6
413,643 + ABID97_RS02055 0.69 +0.3
413,643 + ABID97_RS02055 0.69 -0.9
413,643 + ABID97_RS02055 0.69 -0.1
413,644 - ABID97_RS02055 0.69 -0.8
413,644 - ABID97_RS02055 0.69 -0.7
413,644 - ABID97_RS02055 0.69 -0.4
413,644 - ABID97_RS02055 0.69 +0.5

Or see this region's nucleotide sequence