Experiment: Plant outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01780 and ABID97_RS01785 overlap by 4 nucleotides ABID97_RS01785 and ABID97_RS01790 overlap by 4 nucleotides
ABID97_RS01780: ABID97_RS01780 - FAD-dependent oxidoreductase, at 349,305 to 350,955
_RS01780
ABID97_RS01785: ABID97_RS01785 - DUF2783 domain-containing protein, at 350,952 to 351,155
_RS01785
ABID97_RS01790: ABID97_RS01790 - MBL fold metallo-hydrolase, at 351,152 to 352,129
_RS01790
Position (kb) 350
351
352 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 350.074 kb on - strand, within ABID97_RS01780 at 350.379 kb on + strand, within ABID97_RS01780 at 350.379 kb on + strand, within ABID97_RS01780 at 350.379 kb on + strand, within ABID97_RS01780 at 350.563 kb on + strand, within ABID97_RS01780 at 350.991 kb on + strand, within ABID97_RS01785 at 350.991 kb on + strand, within ABID97_RS01785 at 350.991 kb on + strand, within ABID97_RS01785 at 350.992 kb on - strand, within ABID97_RS01785 at 350.992 kb on - strand, within ABID97_RS01785 at 351.234 kb on - strand at 351.234 kb on - strand at 351.240 kb on - strand at 351.395 kb on + strand, within ABID97_RS01790 at 351.396 kb on - strand, within ABID97_RS01790 at 351.747 kb on - strand, within ABID97_RS01790 at 351.761 kb on + strand, within ABID97_RS01790 at 351.761 kb on + strand, within ABID97_RS01790 at 351.762 kb on - strand, within ABID97_RS01790 at 351.762 kb on - strand, within ABID97_RS01790 at 351.762 kb on - strand, within ABID97_RS01790 at 352.044 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant outgrowth control remove 350,074 - ABID97_RS01780 0.47 -0.0 350,379 + ABID97_RS01780 0.65 -0.3 350,379 + ABID97_RS01780 0.65 -0.0 350,379 + ABID97_RS01780 0.65 +1.3 350,563 + ABID97_RS01780 0.76 +0.1 350,991 + ABID97_RS01785 0.19 +2.0 350,991 + ABID97_RS01785 0.19 -3.7 350,991 + ABID97_RS01785 0.19 +0.3 350,992 - ABID97_RS01785 0.20 +1.2 350,992 - ABID97_RS01785 0.20 +0.6 351,234 - -0.4 351,234 - +0.2 351,240 - +1.4 351,395 + ABID97_RS01790 0.25 +0.1 351,396 - ABID97_RS01790 0.25 +0.4 351,747 - ABID97_RS01790 0.61 +0.6 351,761 + ABID97_RS01790 0.62 +0.7 351,761 + ABID97_RS01790 0.62 +0.2 351,762 - ABID97_RS01790 0.62 +0.1 351,762 - ABID97_RS01790 0.62 +0.4 351,762 - ABID97_RS01790 0.62 -0.2 352,044 - -1.1
Or see this region's nucleotide sequence