Experiment: Plant outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01750 and ABID97_RS01755 are separated by 6 nucleotides ABID97_RS01755 and ABID97_RS01760 are separated by 84 nucleotides
ABID97_RS01750: ABID97_RS01750 - 1-aminocyclopropane-1-carboxylate deaminase, at 342,798 to 343,814
_RS01750
ABID97_RS01755: ABID97_RS01755 - pyruvate kinase, at 343,821 to 345,269
_RS01755
ABID97_RS01760: ABID97_RS01760 - phosphoglycerate kinase, at 345,354 to 346,547
_RS01760
Position (kb) 343
344
345
346 Strain fitness (log2 ratio) -2
-1
0
1
2 at 342.966 kb on + strand, within ABID97_RS01750 at 342.966 kb on + strand, within ABID97_RS01750 at 342.967 kb on - strand, within ABID97_RS01750 at 343.110 kb on + strand, within ABID97_RS01750 at 343.110 kb on + strand, within ABID97_RS01750 at 343.111 kb on - strand, within ABID97_RS01750 at 343.125 kb on + strand, within ABID97_RS01750 at 343.125 kb on + strand, within ABID97_RS01750 at 343.125 kb on + strand, within ABID97_RS01750 at 343.371 kb on + strand, within ABID97_RS01750 at 343.371 kb on + strand, within ABID97_RS01750 at 343.371 kb on + strand, within ABID97_RS01750 at 343.371 kb on + strand, within ABID97_RS01750 at 343.372 kb on - strand, within ABID97_RS01750 at 343.372 kb on - strand, within ABID97_RS01750 at 343.372 kb on - strand, within ABID97_RS01750 at 343.599 kb on + strand, within ABID97_RS01750 at 343.600 kb on - strand, within ABID97_RS01750 at 343.600 kb on - strand, within ABID97_RS01750 at 343.677 kb on + strand, within ABID97_RS01750 at 343.677 kb on + strand, within ABID97_RS01750 at 343.752 kb on + strand at 343.752 kb on + strand at 343.752 kb on + strand at 343.753 kb on - strand at 343.753 kb on - strand at 343.753 kb on - strand at 343.886 kb on + strand at 343.886 kb on + strand at 343.895 kb on - strand at 343.895 kb on - strand at 344.005 kb on + strand, within ABID97_RS01755 at 344.005 kb on + strand, within ABID97_RS01755 at 344.006 kb on - strand, within ABID97_RS01755 at 344.006 kb on - strand, within ABID97_RS01755 at 344.006 kb on - strand, within ABID97_RS01755 at 344.050 kb on + strand, within ABID97_RS01755 at 344.188 kb on + strand, within ABID97_RS01755 at 344.189 kb on - strand, within ABID97_RS01755 at 344.689 kb on + strand, within ABID97_RS01755 at 344.689 kb on + strand, within ABID97_RS01755 at 344.690 kb on - strand, within ABID97_RS01755 at 344.923 kb on + strand, within ABID97_RS01755 at 344.923 kb on + strand, within ABID97_RS01755 at 344.924 kb on - strand, within ABID97_RS01755 at 344.924 kb on - strand, within ABID97_RS01755 at 344.924 kb on - strand, within ABID97_RS01755 at 344.924 kb on - strand, within ABID97_RS01755 at 345.304 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant outgrowth control remove 342,966 + ABID97_RS01750 0.17 +0.7 342,966 + ABID97_RS01750 0.17 +0.3 342,967 - ABID97_RS01750 0.17 +0.6 343,110 + ABID97_RS01750 0.31 +0.1 343,110 + ABID97_RS01750 0.31 -0.0 343,111 - ABID97_RS01750 0.31 -0.2 343,125 + ABID97_RS01750 0.32 -0.1 343,125 + ABID97_RS01750 0.32 +0.3 343,125 + ABID97_RS01750 0.32 -0.3 343,371 + ABID97_RS01750 0.56 +0.2 343,371 + ABID97_RS01750 0.56 +0.1 343,371 + ABID97_RS01750 0.56 +0.8 343,371 + ABID97_RS01750 0.56 -0.2 343,372 - ABID97_RS01750 0.56 +0.2 343,372 - ABID97_RS01750 0.56 +0.5 343,372 - ABID97_RS01750 0.56 +0.1 343,599 + ABID97_RS01750 0.79 +0.0 343,600 - ABID97_RS01750 0.79 +1.7 343,600 - ABID97_RS01750 0.79 +0.2 343,677 + ABID97_RS01750 0.86 -0.2 343,677 + ABID97_RS01750 0.86 +1.1 343,752 + +0.4 343,752 + -0.4 343,752 + +0.4 343,753 - +0.7 343,753 - -0.1 343,753 - +0.6 343,886 + -0.9 343,886 + -1.1 343,895 - -1.8 343,895 - -1.3 344,005 + ABID97_RS01755 0.13 +2.0 344,005 + ABID97_RS01755 0.13 -0.7 344,006 - ABID97_RS01755 0.13 -2.1 344,006 - ABID97_RS01755 0.13 -1.5 344,006 - ABID97_RS01755 0.13 -2.3 344,050 + ABID97_RS01755 0.16 -0.3 344,188 + ABID97_RS01755 0.25 -1.2 344,189 - ABID97_RS01755 0.25 -0.5 344,689 + ABID97_RS01755 0.60 -0.8 344,689 + ABID97_RS01755 0.60 -0.8 344,690 - ABID97_RS01755 0.60 -1.6 344,923 + ABID97_RS01755 0.76 -1.8 344,923 + ABID97_RS01755 0.76 +0.1 344,924 - ABID97_RS01755 0.76 +0.4 344,924 - ABID97_RS01755 0.76 -0.6 344,924 - ABID97_RS01755 0.76 -1.7 344,924 - ABID97_RS01755 0.76 -2.3 345,304 + +0.2
Or see this region's nucleotide sequence