Experiment: Plant outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00350 and ABID97_RS00355 are separated by 46 nucleotides ABID97_RS00355 and ABID97_RS00360 are separated by 46 nucleotides ABID97_RS00360 and ABID97_RS00365 are separated by 12 nucleotides ABID97_RS00365 and ABID97_RS00370 are separated by 2 nucleotides
ABID97_RS00350: ABID97_RS00350 - nuclear transport factor 2 family protein, at 79,684 to 80,136
_RS00350
ABID97_RS00355: ABID97_RS00355 - hypothetical protein, at 80,183 to 80,959
_RS00355
ABID97_RS00360: ABID97_RS00360 - LemA family protein, at 81,006 to 81,608
_RS00360
ABID97_RS00365: ABID97_RS00365 - TPM domain-containing protein, at 81,621 to 82,550
_RS00365
ABID97_RS00370: ABID97_RS00370 - TPM domain-containing protein, at 82,553 to 83,071
_RS00370
Position (kb) 81
82 Strain fitness (log2 ratio) -1
0
1 at 80.066 kb on + strand, within ABID97_RS00350 at 80.066 kb on + strand, within ABID97_RS00350 at 80.066 kb on + strand, within ABID97_RS00350 at 80.066 kb on + strand, within ABID97_RS00350 at 80.066 kb on + strand, within ABID97_RS00350 at 80.066 kb on + strand, within ABID97_RS00350 at 80.067 kb on - strand, within ABID97_RS00350 at 80.067 kb on - strand, within ABID97_RS00350 at 80.067 kb on - strand, within ABID97_RS00350 at 80.067 kb on - strand, within ABID97_RS00350 at 80.067 kb on - strand, within ABID97_RS00350 at 80.067 kb on - strand, within ABID97_RS00350 at 80.658 kb on + strand, within ABID97_RS00355 at 80.750 kb on + strand, within ABID97_RS00355 at 80.750 kb on + strand, within ABID97_RS00355 at 80.750 kb on + strand, within ABID97_RS00355 at 80.751 kb on - strand, within ABID97_RS00355 at 80.969 kb on + strand at 80.969 kb on + strand at 80.969 kb on + strand at 80.969 kb on + strand at 80.969 kb on + strand at 80.969 kb on + strand at 80.969 kb on + strand at 80.970 kb on - strand at 80.970 kb on - strand at 80.970 kb on - strand at 80.970 kb on - strand at 80.970 kb on - strand at 80.970 kb on - strand at 80.970 kb on - strand at 80.970 kb on - strand at 80.970 kb on - strand at 80.970 kb on - strand at 80.974 kb on + strand at 80.975 kb on - strand at 80.975 kb on - strand at 80.975 kb on - strand at 80.999 kb on - strand at 80.999 kb on - strand at 80.999 kb on - strand at 81.468 kb on + strand, within ABID97_RS00360 at 81.468 kb on + strand, within ABID97_RS00360 at 81.523 kb on - strand, within ABID97_RS00360 at 81.523 kb on - strand, within ABID97_RS00360 at 82.548 kb on + strand at 82.549 kb on - strand at 82.549 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant outgrowth control remove 80,066 + ABID97_RS00350 0.84 +0.5 80,066 + ABID97_RS00350 0.84 +0.2 80,066 + ABID97_RS00350 0.84 -0.1 80,066 + ABID97_RS00350 0.84 +0.0 80,066 + ABID97_RS00350 0.84 -0.3 80,066 + ABID97_RS00350 0.84 +0.3 80,067 - ABID97_RS00350 0.85 +0.5 80,067 - ABID97_RS00350 0.85 -1.2 80,067 - ABID97_RS00350 0.85 +1.1 80,067 - ABID97_RS00350 0.85 +0.3 80,067 - ABID97_RS00350 0.85 +1.3 80,067 - ABID97_RS00350 0.85 +0.1 80,658 + ABID97_RS00355 0.61 -0.0 80,750 + ABID97_RS00355 0.73 +0.1 80,750 + ABID97_RS00355 0.73 -0.2 80,750 + ABID97_RS00355 0.73 -0.3 80,751 - ABID97_RS00355 0.73 -1.3 80,969 + -1.0 80,969 + -1.7 80,969 + +0.0 80,969 + -0.6 80,969 + -1.0 80,969 + -0.3 80,969 + -0.2 80,970 - -0.2 80,970 - +0.2 80,970 - -0.3 80,970 - +0.2 80,970 - +0.1 80,970 - +0.4 80,970 - +0.1 80,970 - +0.5 80,970 - +0.5 80,970 - -0.5 80,974 + +0.2 80,975 - -0.1 80,975 - +0.3 80,975 - -0.5 80,999 - +0.5 80,999 - -0.1 80,999 - -0.1 81,468 + ABID97_RS00360 0.77 -1.2 81,468 + ABID97_RS00360 0.77 +0.0 81,523 - ABID97_RS00360 0.86 -0.2 81,523 - ABID97_RS00360 0.86 +0.0 82,548 + -1.2 82,549 - +0.7 82,549 - +0.0
Or see this region's nucleotide sequence