Strain Fitness in Pseudomonas simiae WCS417 around PS417_04155

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04145 and PS417_04150 are separated by 14 nucleotidesPS417_04150 and PS417_04155 are separated by 266 nucleotidesPS417_04155 and PS417_04160 overlap by 1 nucleotides PS417_04145: PS417_04145 - 50S ribosomal protein L13, at 932,305 to 932,733 _04145 PS417_04150: PS417_04150 - 30S ribosomal protein S9, at 932,748 to 933,140 _04150 PS417_04155: PS417_04155 - ubiquinol-cytochrome C reductase, at 933,407 to 934,000 _04155 PS417_04160: PS417_04160 - cytochrome B, at 934,000 to 935,211 _04160 Position (kb) 933 934 935Strain fitness (log2 ratio) -1 0 1at 933.209 kb on + strandat 933.210 kb on - strandat 933.210 kb on - strandat 933.210 kb on - strandat 933.255 kb on + strandat 933.256 kb on - strandat 933.257 kb on + strandat 933.258 kb on - strandat 933.258 kb on - strandat 933.260 kb on + strandat 933.260 kb on + strandat 933.260 kb on + strandat 933.260 kb on + strandat 933.261 kb on - strandat 933.261 kb on - strandat 933.301 kb on + strandat 933.343 kb on + strandat 933.361 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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933,209 + +0.2
933,210 - -0.4
933,210 - -0.8
933,210 - +0.1
933,255 + +0.7
933,256 - +0.7
933,257 + -0.6
933,258 - +0.2
933,258 - -0.4
933,260 + +0.4
933,260 + -0.7
933,260 + -0.5
933,260 + +0.7
933,261 - +1.2
933,261 - -0.8
933,301 + -0.1
933,343 + +0.0
933,361 + -1.2

Or see this region's nucleotide sequence