Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24240 and PS417_24245 are separated by 171 nucleotides PS417_24245 and PS417_24250 are separated by 132 nucleotides PS417_24250 and PS417_24255 are separated by 70 nucleotides PS417_24255 and PS417_24260 overlap by 4 nucleotides
PS417_24240: PS417_24240 - membrane protein, at 5,258,354 to 5,260,207
_24240
PS417_24245: PS417_24245 - chorismate mutase, at 5,260,379 to 5,260,678
_24245
PS417_24250: PS417_24250 - hypothetical protein, at 5,260,811 to 5,261,167
_24250
PS417_24255: PS417_24255 - elongation factor GreAB, at 5,261,238 to 5,261,735
_24255
PS417_24260: PS417_24260 - glutamate dehydrogenase, at 5,261,732 to 5,263,069
_24260
Position (kb) 5260
5261
5262 Strain fitness (log2 ratio) -1
0
1 at 5260.145 kb on + strand at 5260.197 kb on - strand at 5260.203 kb on - strand at 5260.263 kb on - strand at 5260.334 kb on - strand at 5260.334 kb on - strand at 5260.341 kb on + strand at 5260.342 kb on - strand at 5260.342 kb on - strand at 5260.473 kb on - strand, within PS417_24245 at 5260.703 kb on + strand at 5260.737 kb on + strand at 5260.737 kb on + strand at 5260.738 kb on - strand at 5260.769 kb on + strand at 5260.769 kb on + strand at 5260.769 kb on + strand at 5260.769 kb on + strand at 5260.770 kb on - strand at 5260.805 kb on + strand at 5261.194 kb on - strand at 5261.223 kb on + strand at 5261.223 kb on + strand at 5261.224 kb on - strand at 5261.382 kb on + strand, within PS417_24255 at 5261.382 kb on + strand, within PS417_24255 at 5261.383 kb on - strand, within PS417_24255 at 5261.383 kb on - strand, within PS417_24255 at 5261.454 kb on + strand, within PS417_24255 at 5261.516 kb on - strand, within PS417_24255 at 5261.516 kb on - strand, within PS417_24255 at 5261.733 kb on + strand at 5261.802 kb on + strand at 5261.803 kb on - strand at 5261.803 kb on - strand at 5261.803 kb on - strand at 5262.055 kb on + strand, within PS417_24260 at 5262.055 kb on + strand, within PS417_24260
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 5,260,145 + +0.7 5,260,197 - -0.0 5,260,203 - +0.2 5,260,263 - -0.3 5,260,334 - -0.1 5,260,334 - -0.1 5,260,341 + +0.7 5,260,342 - +0.4 5,260,342 - +0.2 5,260,473 - PS417_24245 0.31 -0.8 5,260,703 + -0.6 5,260,737 + -0.6 5,260,737 + -0.1 5,260,738 - -0.0 5,260,769 + +0.9 5,260,769 + -0.5 5,260,769 + -0.4 5,260,769 + +0.3 5,260,770 - -0.7 5,260,805 + -0.4 5,261,194 - +0.4 5,261,223 + -0.2 5,261,223 + -0.6 5,261,224 - -1.0 5,261,382 + PS417_24255 0.29 +0.1 5,261,382 + PS417_24255 0.29 +0.4 5,261,383 - PS417_24255 0.29 +0.1 5,261,383 - PS417_24255 0.29 -0.4 5,261,454 + PS417_24255 0.43 -0.0 5,261,516 - PS417_24255 0.56 -0.7 5,261,516 - PS417_24255 0.56 -0.1 5,261,733 + -0.6 5,261,802 + +0.5 5,261,803 - -0.1 5,261,803 - -0.4 5,261,803 - +1.2 5,262,055 + PS417_24260 0.24 -0.9 5,262,055 + PS417_24260 0.24 -0.6
Or see this region's nucleotide sequence