Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01750 and PS417_01755 are separated by 161 nucleotides PS417_01755 and PS417_01760 are separated by 15 nucleotides
PS417_01750: PS417_01750 - histidine ammonia-lyase, at 388,485 to 390,017
_01750
PS417_01755: PS417_01755 - proline-specific permease, at 390,179 to 391,588
_01755
PS417_01760: PS417_01760 - imidazolonepropionase, at 391,604 to 392,809
_01760
Position (kb) 390
391
392 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 389.204 kb on + strand, within PS417_01750 at 389.393 kb on - strand at 389.910 kb on + strand at 390.058 kb on + strand at 390.059 kb on - strand at 390.062 kb on + strand at 390.062 kb on + strand at 390.063 kb on - strand at 390.063 kb on - strand at 390.063 kb on - strand at 390.063 kb on - strand at 390.092 kb on - strand at 390.092 kb on - strand at 390.092 kb on - strand at 390.168 kb on - strand at 390.168 kb on - strand at 390.226 kb on + strand at 390.226 kb on + strand at 390.226 kb on + strand at 390.227 kb on - strand at 390.227 kb on - strand at 390.272 kb on + strand at 390.273 kb on - strand at 390.425 kb on + strand, within PS417_01755 at 390.425 kb on + strand, within PS417_01755 at 390.425 kb on + strand, within PS417_01755 at 390.464 kb on + strand, within PS417_01755 at 390.514 kb on + strand, within PS417_01755 at 390.518 kb on + strand, within PS417_01755 at 390.518 kb on + strand, within PS417_01755 at 390.519 kb on - strand, within PS417_01755 at 390.519 kb on - strand, within PS417_01755 at 390.519 kb on - strand, within PS417_01755 at 390.519 kb on - strand, within PS417_01755 at 390.927 kb on - strand, within PS417_01755 at 390.927 kb on - strand, within PS417_01755 at 390.927 kb on - strand, within PS417_01755 at 390.955 kb on + strand, within PS417_01755 at 390.956 kb on - strand, within PS417_01755 at 390.960 kb on - strand, within PS417_01755 at 391.115 kb on + strand, within PS417_01755 at 391.116 kb on - strand, within PS417_01755 at 391.656 kb on - strand at 391.732 kb on + strand, within PS417_01760 at 391.733 kb on - strand at 391.733 kb on - strand, within PS417_01760 at 391.866 kb on - strand, within PS417_01760 at 391.998 kb on + strand at 392.098 kb on + strand, within PS417_01760 at 392.098 kb on + strand, within PS417_01760 at 392.153 kb on + strand, within PS417_01760 at 392.460 kb on - strand, within PS417_01760
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 389,204 + PS417_01750 0.47 -0.5 389,393 - +2.3 389,910 + +0.2 390,058 + +0.3 390,059 - +0.7 390,062 + +0.9 390,062 + -0.5 390,063 - -0.2 390,063 - +1.1 390,063 - -0.4 390,063 - -0.7 390,092 - +0.3 390,092 - +0.7 390,092 - -1.4 390,168 - -1.2 390,168 - +1.3 390,226 + -0.1 390,226 + -0.5 390,226 + +0.1 390,227 - +1.0 390,227 - +0.3 390,272 + +0.9 390,273 - -0.3 390,425 + PS417_01755 0.17 +3.1 390,425 + PS417_01755 0.17 +1.6 390,425 + PS417_01755 0.17 -0.2 390,464 + PS417_01755 0.20 +0.4 390,514 + PS417_01755 0.24 +0.8 390,518 + PS417_01755 0.24 -2.4 390,518 + PS417_01755 0.24 +0.4 390,519 - PS417_01755 0.24 +0.9 390,519 - PS417_01755 0.24 +0.5 390,519 - PS417_01755 0.24 +0.3 390,519 - PS417_01755 0.24 +0.7 390,927 - PS417_01755 0.53 +0.3 390,927 - PS417_01755 0.53 +0.4 390,927 - PS417_01755 0.53 +0.4 390,955 + PS417_01755 0.55 +0.2 390,956 - PS417_01755 0.55 +0.5 390,960 - PS417_01755 0.55 +0.0 391,115 + PS417_01755 0.66 -0.1 391,116 - PS417_01755 0.66 +0.1 391,656 - +0.2 391,732 + PS417_01760 0.11 -0.5 391,733 - +1.9 391,733 - PS417_01760 0.11 +0.9 391,866 - PS417_01760 0.22 +0.6 391,998 + +1.3 392,098 + PS417_01760 0.41 +0.1 392,098 + PS417_01760 0.41 -0.4 392,153 + PS417_01760 0.46 -0.6 392,460 - PS417_01760 0.71 -1.3
Or see this region's nucleotide sequence