Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00915 and PS417_00920 are separated by 166 nucleotides PS417_00920 and PS417_00925 are separated by 211 nucleotides PS417_00925 and PS417_00930 are separated by 73 nucleotides
PS417_00915: PS417_00915 - aminotransferase, at 204,672 to 205,856
_00915
PS417_00920: PS417_00920 - diguanylate cyclase, at 206,023 to 207,936
_00920
PS417_00925: PS417_00925 - hypothetical protein, at 208,148 to 208,330
_00925
PS417_00930: PS417_00930 - ABC transporter permease, at 208,404 to 209,414
_00930
Position (kb) 206
207
208 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 205.395 kb on - strand, within PS417_00915 at 205.468 kb on + strand, within PS417_00915 at 205.712 kb on + strand, within PS417_00915 at 205.751 kb on - strand at 205.762 kb on + strand at 205.763 kb on - strand at 205.849 kb on + strand at 205.849 kb on + strand at 205.850 kb on - strand at 205.850 kb on - strand at 205.856 kb on + strand at 205.856 kb on + strand at 205.863 kb on + strand at 205.864 kb on - strand at 205.962 kb on - strand at 205.966 kb on + strand at 205.966 kb on + strand at 205.967 kb on - strand at 205.967 kb on - strand at 205.969 kb on - strand at 206.022 kb on + strand at 206.023 kb on - strand at 206.048 kb on + strand at 206.064 kb on - strand at 206.064 kb on - strand at 206.064 kb on - strand at 206.064 kb on - strand at 206.065 kb on + strand at 206.065 kb on + strand at 206.065 kb on + strand at 206.065 kb on + strand at 206.065 kb on + strand at 206.066 kb on - strand at 206.066 kb on - strand at 206.066 kb on - strand at 206.066 kb on - strand at 206.109 kb on - strand at 206.109 kb on - strand at 206.167 kb on + strand at 206.584 kb on + strand, within PS417_00920 at 207.130 kb on + strand, within PS417_00920 at 207.220 kb on + strand, within PS417_00920 at 207.220 kb on + strand, within PS417_00920 at 207.223 kb on + strand, within PS417_00920 at 207.224 kb on - strand, within PS417_00920 at 207.325 kb on - strand, within PS417_00920 at 208.081 kb on + strand at 208.081 kb on + strand at 208.081 kb on + strand at 208.081 kb on + strand at 208.081 kb on + strand at 208.081 kb on + strand at 208.081 kb on + strand at 208.082 kb on - strand at 208.082 kb on - strand at 208.127 kb on - strand at 208.135 kb on - strand at 208.135 kb on - strand at 208.135 kb on - strand at 208.162 kb on - strand at 208.162 kb on - strand at 208.165 kb on + strand at 208.258 kb on + strand, within PS417_00925 at 208.272 kb on + strand, within PS417_00925 at 208.329 kb on - strand at 208.353 kb on + strand at 208.354 kb on - strand at 208.365 kb on + strand at 208.366 kb on - strand at 208.366 kb on - strand at 208.366 kb on - strand at 208.367 kb on + strand at 208.367 kb on + strand at 208.403 kb on + strand at 208.403 kb on + strand at 208.404 kb on - strand at 208.404 kb on - strand at 208.404 kb on - strand at 208.404 kb on - strand at 208.479 kb on + strand at 208.530 kb on + strand, within PS417_00930 at 208.530 kb on + strand, within PS417_00930 at 208.796 kb on + strand, within PS417_00930 at 208.797 kb on - strand, within PS417_00930
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 205,395 - PS417_00915 0.61 -0.7 205,468 + PS417_00915 0.67 +0.8 205,712 + PS417_00915 0.88 +1.3 205,751 - -0.8 205,762 + +1.9 205,763 - -0.7 205,849 + +0.9 205,849 + +0.7 205,850 - -0.5 205,850 - -0.4 205,856 + -0.4 205,856 + -0.0 205,863 + -0.9 205,864 - -1.6 205,962 - -0.2 205,966 + +1.1 205,966 + +1.7 205,967 - -2.8 205,967 - -0.5 205,969 - -0.6 206,022 + -0.2 206,023 - +0.2 206,048 + -1.1 206,064 - +0.7 206,064 - -0.8 206,064 - -0.9 206,064 - -0.2 206,065 + -1.4 206,065 + -0.6 206,065 + -0.5 206,065 + +1.4 206,065 + -0.7 206,066 - -1.1 206,066 - -0.8 206,066 - -0.1 206,066 - -0.4 206,109 - -1.9 206,109 - -1.9 206,167 + -1.1 206,584 + PS417_00920 0.29 +1.4 207,130 + PS417_00920 0.58 +1.4 207,220 + PS417_00920 0.63 -1.0 207,220 + PS417_00920 0.63 -0.6 207,223 + PS417_00920 0.63 -1.8 207,224 - PS417_00920 0.63 -1.1 207,325 - PS417_00920 0.68 -1.4 208,081 + -0.8 208,081 + +0.8 208,081 + -0.8 208,081 + +1.2 208,081 + -0.4 208,081 + +0.2 208,081 + +0.4 208,082 - -0.2 208,082 - -0.5 208,127 - +0.4 208,135 - +2.0 208,135 - -0.0 208,135 - +1.2 208,162 - -0.1 208,162 - -0.9 208,165 + +1.4 208,258 + PS417_00925 0.60 -0.4 208,272 + PS417_00925 0.68 +0.3 208,329 - +0.7 208,353 + -0.9 208,354 - -0.9 208,365 + +0.1 208,366 - +0.2 208,366 - +0.2 208,366 - -0.3 208,367 + +0.4 208,367 + +0.1 208,403 + -0.1 208,403 + -0.1 208,404 - -0.1 208,404 - -0.2 208,404 - -0.3 208,404 - +0.2 208,479 + +0.2 208,530 + PS417_00930 0.12 -1.1 208,530 + PS417_00930 0.12 -1.0 208,796 + PS417_00930 0.39 +0.8 208,797 - PS417_00930 0.39 -0.4
Or see this region's nucleotide sequence