Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00790 and PS417_00795 are separated by 41 nucleotides PS417_00795 and PS417_00800 overlap by 4 nucleotides PS417_00800 and PS417_00805 are separated by 112 nucleotides
PS417_00790: PS417_00790 - curli production assembly protein CsgG, at 176,162 to 176,842
_00790
PS417_00795: PS417_00795 - lipoprotein, at 176,884 to 177,246
_00795
PS417_00800: PS417_00800 - lipoprotein, at 177,243 to 177,893
_00800
PS417_00805: PS417_00805 - hypothetical protein, at 178,006 to 179,646
_00805
Position (kb) 177
178 Strain fitness (log2 ratio) -2
-1
0
1 at 176.289 kb on - strand, within PS417_00790 at 176.342 kb on + strand, within PS417_00790 at 176.342 kb on + strand, within PS417_00790 at 176.342 kb on + strand, within PS417_00790 at 176.342 kb on + strand, within PS417_00790 at 176.343 kb on - strand, within PS417_00790 at 176.615 kb on + strand, within PS417_00790 at 176.666 kb on + strand at 176.667 kb on - strand, within PS417_00790 at 176.667 kb on - strand, within PS417_00790 at 176.667 kb on - strand, within PS417_00790 at 176.877 kb on + strand at 176.877 kb on + strand at 176.877 kb on + strand at 176.877 kb on + strand at 176.877 kb on + strand at 176.878 kb on - strand at 176.878 kb on - strand at 176.966 kb on - strand, within PS417_00795 at 176.966 kb on - strand, within PS417_00795 at 177.001 kb on + strand, within PS417_00795 at 177.002 kb on - strand, within PS417_00795 at 177.119 kb on - strand, within PS417_00795 at 177.119 kb on - strand, within PS417_00795 at 177.197 kb on - strand, within PS417_00795 at 177.240 kb on + strand at 177.241 kb on - strand at 177.322 kb on - strand, within PS417_00800 at 177.331 kb on - strand, within PS417_00800 at 177.331 kb on - strand, within PS417_00800 at 177.331 kb on - strand at 177.403 kb on - strand, within PS417_00800 at 177.448 kb on - strand, within PS417_00800 at 177.448 kb on - strand, within PS417_00800 at 177.451 kb on - strand, within PS417_00800 at 177.573 kb on + strand, within PS417_00800 at 177.573 kb on + strand, within PS417_00800 at 177.574 kb on - strand, within PS417_00800 at 177.574 kb on - strand, within PS417_00800 at 177.603 kb on + strand, within PS417_00800 at 177.604 kb on - strand, within PS417_00800 at 177.604 kb on - strand, within PS417_00800 at 177.604 kb on - strand, within PS417_00800 at 177.604 kb on - strand, within PS417_00800 at 177.604 kb on - strand, within PS417_00800 at 178.157 kb on + strand at 178.265 kb on - strand, within PS417_00805 at 178.358 kb on + strand, within PS417_00805 at 178.426 kb on + strand, within PS417_00805 at 178.426 kb on + strand, within PS417_00805 at 178.702 kb on + strand, within PS417_00805 at 178.703 kb on - strand, within PS417_00805 at 178.703 kb on - strand, within PS417_00805
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 176,289 - PS417_00790 0.19 -0.8 176,342 + PS417_00790 0.26 +0.1 176,342 + PS417_00790 0.26 +0.7 176,342 + PS417_00790 0.26 -0.0 176,342 + PS417_00790 0.26 -1.4 176,343 - PS417_00790 0.27 -0.6 176,615 + PS417_00790 0.67 +0.2 176,666 + +1.4 176,667 - PS417_00790 0.74 -0.4 176,667 - PS417_00790 0.74 -1.8 176,667 - PS417_00790 0.74 +0.5 176,877 + -0.0 176,877 + -0.2 176,877 + -1.4 176,877 + +1.1 176,877 + -0.4 176,878 - -1.1 176,878 - -1.6 176,966 - PS417_00795 0.23 -0.1 176,966 - PS417_00795 0.23 +0.4 177,001 + PS417_00795 0.32 -0.1 177,002 - PS417_00795 0.33 +0.5 177,119 - PS417_00795 0.65 -0.5 177,119 - PS417_00795 0.65 +0.3 177,197 - PS417_00795 0.86 +1.4 177,240 + +0.4 177,241 - -0.4 177,322 - PS417_00800 0.12 -1.3 177,331 - PS417_00800 0.14 +0.1 177,331 - PS417_00800 0.14 -0.4 177,331 - +0.4 177,403 - PS417_00800 0.25 -0.4 177,448 - PS417_00800 0.31 +0.3 177,448 - PS417_00800 0.31 -0.6 177,451 - PS417_00800 0.32 +0.3 177,573 + PS417_00800 0.51 -0.3 177,573 + PS417_00800 0.51 -1.1 177,574 - PS417_00800 0.51 +0.0 177,574 - PS417_00800 0.51 +0.3 177,603 + PS417_00800 0.55 +0.3 177,604 - PS417_00800 0.55 +0.3 177,604 - PS417_00800 0.55 -0.5 177,604 - PS417_00800 0.55 -0.4 177,604 - PS417_00800 0.55 +0.1 177,604 - PS417_00800 0.55 +0.1 178,157 + -1.2 178,265 - PS417_00805 0.16 -0.2 178,358 + PS417_00805 0.21 +0.2 178,426 + PS417_00805 0.26 -1.2 178,426 + PS417_00805 0.26 +0.9 178,702 + PS417_00805 0.42 -0.3 178,703 - PS417_00805 0.42 -0.0 178,703 - PS417_00805 0.42 -0.6
Or see this region's nucleotide sequence