Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_2498 and B158DRAFT_2499 are separated by 63 nucleotides B158DRAFT_2499 and B158DRAFT_2500 are separated by 268 nucleotides B158DRAFT_2500 and B158DRAFT_2501 are separated by 113 nucleotides B158DRAFT_2501 and B158DRAFT_2502 are separated by 48 nucleotides
B158DRAFT_2498: B158DRAFT_2498 - hypothetical protein, at 681,564 to 681,965
_2498
B158DRAFT_2499: B158DRAFT_2499 - hypothetical protein, at 682,029 to 682,496
_2499
B158DRAFT_2500: B158DRAFT_2500 - aconitase (EC 4.2.1.3), at 682,765 to 685,377
_2500
B158DRAFT_2501: B158DRAFT_2501 - Uncharacterized relative of glutathione S-transferase, MAPEG superfamily, at 685,491 to 685,895
_2501
B158DRAFT_2502: B158DRAFT_2502 - periplasmic sensor diguanylate cyclase/phosphodiesterase, at 685,944 to 688,535
_2502
Position (kb) 682
683
684
685
686 Strain fitness (log2 ratio) -2
-1
0
1 at 681.804 kb on - strand, within B158DRAFT_2498 at 681.864 kb on - strand, within B158DRAFT_2498 at 681.864 kb on - strand, within B158DRAFT_2498 at 681.875 kb on - strand, within B158DRAFT_2498 at 681.883 kb on + strand, within B158DRAFT_2498 at 681.921 kb on + strand, within B158DRAFT_2498 at 682.035 kb on + strand at 682.235 kb on - strand, within B158DRAFT_2499 at 682.262 kb on - strand, within B158DRAFT_2499 at 682.269 kb on - strand, within B158DRAFT_2499 at 682.269 kb on - strand, within B158DRAFT_2499 at 682.269 kb on - strand, within B158DRAFT_2499 at 682.269 kb on - strand, within B158DRAFT_2499 at 682.269 kb on - strand, within B158DRAFT_2499 at 682.269 kb on - strand, within B158DRAFT_2499 at 682.303 kb on + strand, within B158DRAFT_2499 at 682.311 kb on - strand, within B158DRAFT_2499 at 682.414 kb on + strand, within B158DRAFT_2499 at 682.422 kb on - strand, within B158DRAFT_2499 at 682.422 kb on - strand, within B158DRAFT_2499 at 682.432 kb on - strand, within B158DRAFT_2499 at 682.448 kb on + strand, within B158DRAFT_2499 at 682.455 kb on + strand at 682.456 kb on - strand at 682.473 kb on + strand at 682.526 kb on + strand at 682.534 kb on - strand at 682.603 kb on + strand at 682.603 kb on + strand at 682.611 kb on - strand at 685.314 kb on + strand at 685.380 kb on - strand at 685.386 kb on - strand at 685.488 kb on + strand at 685.524 kb on + strand at 685.571 kb on - strand, within B158DRAFT_2501 at 685.573 kb on + strand, within B158DRAFT_2501 at 685.573 kb on + strand, within B158DRAFT_2501 at 685.581 kb on - strand, within B158DRAFT_2501 at 685.581 kb on - strand, within B158DRAFT_2501 at 685.588 kb on - strand, within B158DRAFT_2501 at 685.614 kb on + strand, within B158DRAFT_2501 at 685.614 kb on + strand, within B158DRAFT_2501 at 685.614 kb on + strand, within B158DRAFT_2501 at 685.619 kb on + strand, within B158DRAFT_2501 at 685.622 kb on - strand, within B158DRAFT_2501 at 685.622 kb on - strand, within B158DRAFT_2501 at 685.627 kb on - strand, within B158DRAFT_2501 at 685.648 kb on + strand, within B158DRAFT_2501 at 685.658 kb on - strand, within B158DRAFT_2501 at 685.726 kb on + strand, within B158DRAFT_2501 at 685.729 kb on - strand, within B158DRAFT_2501 at 685.731 kb on + strand, within B158DRAFT_2501 at 685.731 kb on + strand, within B158DRAFT_2501 at 685.739 kb on - strand, within B158DRAFT_2501 at 685.739 kb on - strand, within B158DRAFT_2501 at 685.765 kb on - strand, within B158DRAFT_2501 at 685.826 kb on - strand, within B158DRAFT_2501 at 685.826 kb on - strand, within B158DRAFT_2501 at 685.836 kb on - strand, within B158DRAFT_2501 at 685.836 kb on - strand, within B158DRAFT_2501 at 685.836 kb on - strand, within B158DRAFT_2501 at 685.836 kb on - strand, within B158DRAFT_2501 at 685.898 kb on - strand at 685.919 kb on + strand at 685.919 kb on + strand at 685.924 kb on + strand at 685.927 kb on - strand at 685.927 kb on - strand at 685.932 kb on - strand at 685.932 kb on - strand at 685.960 kb on + strand at 685.968 kb on - strand at 685.968 kb on - strand at 685.991 kb on - strand at 686.051 kb on + strand at 686.061 kb on + strand at 686.081 kb on + strand at 686.293 kb on - strand, within B158DRAFT_2502
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 681,804 - B158DRAFT_2498 0.60 -2.7 681,864 - B158DRAFT_2498 0.75 +0.1 681,864 - B158DRAFT_2498 0.75 -0.4 681,875 - B158DRAFT_2498 0.77 -0.9 681,883 + B158DRAFT_2498 0.79 -1.4 681,921 + B158DRAFT_2498 0.89 -0.4 682,035 + -0.1 682,235 - B158DRAFT_2499 0.44 +0.5 682,262 - B158DRAFT_2499 0.50 -0.1 682,269 - B158DRAFT_2499 0.51 +0.2 682,269 - B158DRAFT_2499 0.51 +0.8 682,269 - B158DRAFT_2499 0.51 -0.5 682,269 - B158DRAFT_2499 0.51 -0.1 682,269 - B158DRAFT_2499 0.51 -0.3 682,269 - B158DRAFT_2499 0.51 +0.1 682,303 + B158DRAFT_2499 0.59 -0.8 682,311 - B158DRAFT_2499 0.60 -0.5 682,414 + B158DRAFT_2499 0.82 +0.3 682,422 - B158DRAFT_2499 0.84 +0.6 682,422 - B158DRAFT_2499 0.84 +0.2 682,432 - B158DRAFT_2499 0.86 -1.2 682,448 + B158DRAFT_2499 0.90 -0.3 682,455 + +0.3 682,456 - -0.2 682,473 + +0.3 682,526 + -0.4 682,534 - +0.5 682,603 + -0.7 682,603 + -0.3 682,611 - +0.3 685,314 + -0.9 685,380 - +0.3 685,386 - -0.2 685,488 + -0.4 685,524 + -0.6 685,571 - B158DRAFT_2501 0.20 -0.3 685,573 + B158DRAFT_2501 0.20 -1.6 685,573 + B158DRAFT_2501 0.20 -0.3 685,581 - B158DRAFT_2501 0.22 -0.5 685,581 - B158DRAFT_2501 0.22 -0.9 685,588 - B158DRAFT_2501 0.24 -0.2 685,614 + B158DRAFT_2501 0.30 -0.3 685,614 + B158DRAFT_2501 0.30 +0.1 685,614 + B158DRAFT_2501 0.30 +0.2 685,619 + B158DRAFT_2501 0.32 -0.3 685,622 - B158DRAFT_2501 0.32 -0.1 685,622 - B158DRAFT_2501 0.32 -0.0 685,627 - B158DRAFT_2501 0.34 -0.1 685,648 + B158DRAFT_2501 0.39 +0.1 685,658 - B158DRAFT_2501 0.41 +0.3 685,726 + B158DRAFT_2501 0.58 -0.8 685,729 - B158DRAFT_2501 0.59 +0.2 685,731 + B158DRAFT_2501 0.59 -0.3 685,731 + B158DRAFT_2501 0.59 -0.4 685,739 - B158DRAFT_2501 0.61 -1.5 685,739 - B158DRAFT_2501 0.61 -0.3 685,765 - B158DRAFT_2501 0.68 -0.1 685,826 - B158DRAFT_2501 0.83 -1.3 685,826 - B158DRAFT_2501 0.83 -0.9 685,836 - B158DRAFT_2501 0.85 -0.7 685,836 - B158DRAFT_2501 0.85 -0.1 685,836 - B158DRAFT_2501 0.85 -0.2 685,836 - B158DRAFT_2501 0.85 -0.3 685,898 - +0.0 685,919 + -1.5 685,919 + +1.0 685,924 + -0.5 685,927 - -0.4 685,927 - -0.2 685,932 - +0.0 685,932 - -0.5 685,960 + -0.0 685,968 - +0.7 685,968 - +0.1 685,991 - +0.5 686,051 + +0.0 686,061 + +0.3 686,081 + -0.2 686,293 - B158DRAFT_2502 0.13 +0.3
Or see this region's nucleotide sequence