Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2145

Experiment: marine_broth_2216 with nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2144 and B158DRAFT_2145 are separated by 14 nucleotidesB158DRAFT_2145 and B158DRAFT_2146 are separated by 137 nucleotides B158DRAFT_2144: B158DRAFT_2144 - pyruvate dehydrogenase E1 component, homodimeric type, at 278,500 to 281,181 _2144 B158DRAFT_2145: B158DRAFT_2145 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form, at 281,196 to 282,854 _2145 B158DRAFT_2146: B158DRAFT_2146 - dihydrolipoamide dehydrogenase, at 282,992 to 284,410 _2146 Position (kb) 281 282 283Strain fitness (log2 ratio) -3 -2 -1 0 1at 280.198 kb on + strand, within B158DRAFT_2144at 280.245 kb on - strand, within B158DRAFT_2144at 280.347 kb on - strand, within B158DRAFT_2144at 280.354 kb on + strand, within B158DRAFT_2144at 280.441 kb on + strand, within B158DRAFT_2144at 280.476 kb on - strand, within B158DRAFT_2144at 280.489 kb on + strand, within B158DRAFT_2144at 280.497 kb on - strand, within B158DRAFT_2144at 280.539 kb on - strand, within B158DRAFT_2144at 280.576 kb on + strand, within B158DRAFT_2144at 280.613 kb on + strand, within B158DRAFT_2144at 280.622 kb on + strand, within B158DRAFT_2144at 280.622 kb on + strand, within B158DRAFT_2144at 280.622 kb on + strand, within B158DRAFT_2144at 280.622 kb on - strand, within B158DRAFT_2144at 280.701 kb on + strand, within B158DRAFT_2144at 280.872 kb on + strand, within B158DRAFT_2144at 280.872 kb on + strand, within B158DRAFT_2144at 280.880 kb on - strand, within B158DRAFT_2144at 280.895 kb on - strand, within B158DRAFT_2144at 280.895 kb on - strand, within B158DRAFT_2144at 280.895 kb on - strand, within B158DRAFT_2144at 280.938 kb on + strandat 280.938 kb on + strandat 280.946 kb on - strandat 280.946 kb on - strandat 280.946 kb on - strandat 280.974 kb on + strandat 280.974 kb on + strandat 280.982 kb on - strandat 280.994 kb on - strandat 281.072 kb on - strandat 281.129 kb on - strandat 281.163 kb on - strandat 281.166 kb on + strandat 281.183 kb on - strandat 281.282 kb on - strandat 281.308 kb on - strandat 281.340 kb on - strandat 281.377 kb on + strand, within B158DRAFT_2145at 281.379 kb on - strand, within B158DRAFT_2145at 281.386 kb on - strand, within B158DRAFT_2145at 281.386 kb on - strand, within B158DRAFT_2145at 281.459 kb on - strand, within B158DRAFT_2145at 281.459 kb on - strand, within B158DRAFT_2145at 281.466 kb on - strand, within B158DRAFT_2145at 281.501 kb on + strand, within B158DRAFT_2145at 281.501 kb on + strand, within B158DRAFT_2145at 281.509 kb on - strand, within B158DRAFT_2145at 281.509 kb on - strand, within B158DRAFT_2145at 281.629 kb on + strand, within B158DRAFT_2145at 281.637 kb on - strand, within B158DRAFT_2145at 281.649 kb on - strand, within B158DRAFT_2145at 281.659 kb on - strand, within B158DRAFT_2145at 281.725 kb on - strand, within B158DRAFT_2145at 281.750 kb on - strand, within B158DRAFT_2145at 281.752 kb on + strand, within B158DRAFT_2145at 281.752 kb on + strand, within B158DRAFT_2145at 281.796 kb on - strand, within B158DRAFT_2145at 281.904 kb on - strand, within B158DRAFT_2145at 281.905 kb on - strand, within B158DRAFT_2145at 281.965 kb on + strand, within B158DRAFT_2145at 282.030 kb on - strand, within B158DRAFT_2145at 282.057 kb on + strand, within B158DRAFT_2145at 282.065 kb on - strand, within B158DRAFT_2145at 282.083 kb on + strand, within B158DRAFT_2145at 282.320 kb on + strand, within B158DRAFT_2145at 282.320 kb on + strand, within B158DRAFT_2145at 282.389 kb on + strand, within B158DRAFT_2145at 282.396 kb on - strand, within B158DRAFT_2145at 282.483 kb on - strand, within B158DRAFT_2145at 282.516 kb on + strand, within B158DRAFT_2145at 282.588 kb on + strand, within B158DRAFT_2145at 282.609 kb on - strand, within B158DRAFT_2145at 282.626 kb on - strand, within B158DRAFT_2145at 282.640 kb on + strand, within B158DRAFT_2145at 282.640 kb on + strand, within B158DRAFT_2145at 282.648 kb on - strand, within B158DRAFT_2145at 282.661 kb on + strand, within B158DRAFT_2145at 282.698 kb on + strandat 282.735 kb on + strandat 282.752 kb on + strandat 282.760 kb on - strandat 282.841 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM
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280,198 + B158DRAFT_2144 0.63 -0.5
280,245 - B158DRAFT_2144 0.65 +0.0
280,347 - B158DRAFT_2144 0.69 +1.0
280,354 + B158DRAFT_2144 0.69 -1.8
280,441 + B158DRAFT_2144 0.72 +1.0
280,476 - B158DRAFT_2144 0.74 -1.5
280,489 + B158DRAFT_2144 0.74 +0.0
280,497 - B158DRAFT_2144 0.74 +0.0
280,539 - B158DRAFT_2144 0.76 +1.0
280,576 + B158DRAFT_2144 0.77 +0.0
280,613 + B158DRAFT_2144 0.79 -2.3
280,622 + B158DRAFT_2144 0.79 -1.0
280,622 + B158DRAFT_2144 0.79 +0.0
280,622 + B158DRAFT_2144 0.79 -2.1
280,622 - B158DRAFT_2144 0.79 -1.3
280,701 + B158DRAFT_2144 0.82 +1.0
280,872 + B158DRAFT_2144 0.88 -1.7
280,872 + B158DRAFT_2144 0.88 +1.0
280,880 - B158DRAFT_2144 0.89 -1.0
280,895 - B158DRAFT_2144 0.89 +1.0
280,895 - B158DRAFT_2144 0.89 -2.3
280,895 - B158DRAFT_2144 0.89 -2.0
280,938 + +1.0
280,938 + -0.5
280,946 - -1.2
280,946 - -1.5
280,946 - +1.0
280,974 + -2.3
280,974 + -2.4
280,982 - +1.6
280,994 - -1.3
281,072 - +1.0
281,129 - -1.3
281,163 - -2.5
281,166 + -1.3
281,183 - +1.0
281,282 - +0.0
281,308 - +0.0
281,340 - +1.6
281,377 + B158DRAFT_2145 0.11 +0.0
281,379 - B158DRAFT_2145 0.11 -2.0
281,386 - B158DRAFT_2145 0.11 -1.3
281,386 - B158DRAFT_2145 0.11 +1.0
281,459 - B158DRAFT_2145 0.16 -1.0
281,459 - B158DRAFT_2145 0.16 +1.0
281,466 - B158DRAFT_2145 0.16 -2.0
281,501 + B158DRAFT_2145 0.18 +0.0
281,501 + B158DRAFT_2145 0.18 -0.5
281,509 - B158DRAFT_2145 0.19 -0.5
281,509 - B158DRAFT_2145 0.19 -1.0
281,629 + B158DRAFT_2145 0.26 -0.5
281,637 - B158DRAFT_2145 0.27 -1.3
281,649 - B158DRAFT_2145 0.27 +0.0
281,659 - B158DRAFT_2145 0.28 +1.0
281,725 - B158DRAFT_2145 0.32 -1.8
281,750 - B158DRAFT_2145 0.33 +0.0
281,752 + B158DRAFT_2145 0.34 -2.0
281,752 + B158DRAFT_2145 0.34 -2.1
281,796 - B158DRAFT_2145 0.36 +0.0
281,904 - B158DRAFT_2145 0.43 +1.0
281,905 - B158DRAFT_2145 0.43 +1.0
281,965 + B158DRAFT_2145 0.46 -2.0
282,030 - B158DRAFT_2145 0.50 +0.0
282,057 + B158DRAFT_2145 0.52 +0.0
282,065 - B158DRAFT_2145 0.52 -1.3
282,083 + B158DRAFT_2145 0.53 +0.0
282,320 + B158DRAFT_2145 0.68 +0.5
282,320 + B158DRAFT_2145 0.68 +0.0
282,389 + B158DRAFT_2145 0.72 -2.3
282,396 - B158DRAFT_2145 0.72 -1.5
282,483 - B158DRAFT_2145 0.78 +1.0
282,516 + B158DRAFT_2145 0.80 -3.3
282,588 + B158DRAFT_2145 0.84 -1.0
282,609 - B158DRAFT_2145 0.85 -0.5
282,626 - B158DRAFT_2145 0.86 +0.0
282,640 + B158DRAFT_2145 0.87 -0.5
282,640 + B158DRAFT_2145 0.87 +1.0
282,648 - B158DRAFT_2145 0.88 +0.0
282,661 + B158DRAFT_2145 0.88 -1.5
282,698 + -0.5
282,735 + -1.3
282,752 + -1.3
282,760 - -0.3
282,841 - +0.0

Or see this region's nucleotide sequence