Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1963

Experiment: marine_broth_2216 with nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1960 and B158DRAFT_1961 overlap by 4 nucleotidesB158DRAFT_1961 and B158DRAFT_1962 overlap by 4 nucleotidesB158DRAFT_1962 and B158DRAFT_1963 overlap by 8 nucleotidesB158DRAFT_1963 and B158DRAFT_1964 are separated by 71 nucleotidesB158DRAFT_1964 and B158DRAFT_1965 are separated by 209 nucleotides B158DRAFT_1960: B158DRAFT_1960 - hypothetical protein, at 95,901 to 96,569 _1960 B158DRAFT_1961: B158DRAFT_1961 - hypothetical protein, at 96,566 to 96,970 _1961 B158DRAFT_1962: B158DRAFT_1962 - Predicted integral membrane protein, at 96,967 to 97,440 _1962 B158DRAFT_1963: B158DRAFT_1963 - Saccharopine dehydrogenase and related proteins, at 97,433 to 98,548 _1963 B158DRAFT_1964: B158DRAFT_1964 - elongation factor P-like protein YeiP, at 98,620 to 99,189 _1964 B158DRAFT_1965: B158DRAFT_1965 - Carboxypeptidase C (cathepsin A), at 99,399 to 100,889 _1965 Position (kb) 97 98 99Strain fitness (log2 ratio) -1 0 1at 96.514 kb on - strandat 96.647 kb on + strand, within B158DRAFT_1961at 96.677 kb on - strand, within B158DRAFT_1961at 96.765 kb on + strand, within B158DRAFT_1961at 96.785 kb on + strand, within B158DRAFT_1961at 96.854 kb on + strand, within B158DRAFT_1961at 96.887 kb on + strand, within B158DRAFT_1961at 96.911 kb on - strand, within B158DRAFT_1961at 97.035 kb on + strand, within B158DRAFT_1962at 97.369 kb on + strand, within B158DRAFT_1962at 97.500 kb on + strandat 97.502 kb on + strandat 97.502 kb on + strandat 97.505 kb on - strandat 97.576 kb on - strand, within B158DRAFT_1963at 97.582 kb on + strand, within B158DRAFT_1963at 97.605 kb on - strand, within B158DRAFT_1963at 97.605 kb on - strand, within B158DRAFT_1963at 97.629 kb on - strand, within B158DRAFT_1963at 97.635 kb on + strand, within B158DRAFT_1963at 97.643 kb on - strand, within B158DRAFT_1963at 97.679 kb on + strand, within B158DRAFT_1963at 97.687 kb on - strand, within B158DRAFT_1963at 97.693 kb on - strand, within B158DRAFT_1963at 97.703 kb on - strand, within B158DRAFT_1963at 97.739 kb on + strand, within B158DRAFT_1963at 97.739 kb on + strand, within B158DRAFT_1963at 97.739 kb on + strand, within B158DRAFT_1963at 97.739 kb on + strand, within B158DRAFT_1963at 97.739 kb on + strand, within B158DRAFT_1963at 97.739 kb on + strand, within B158DRAFT_1963at 97.747 kb on - strand, within B158DRAFT_1963at 97.749 kb on + strand, within B158DRAFT_1963at 97.795 kb on + strand, within B158DRAFT_1963at 97.813 kb on + strand, within B158DRAFT_1963at 97.819 kb on + strand, within B158DRAFT_1963at 97.819 kb on + strand, within B158DRAFT_1963at 97.820 kb on + strand, within B158DRAFT_1963at 97.827 kb on - strand, within B158DRAFT_1963at 97.830 kb on + strand, within B158DRAFT_1963at 97.838 kb on - strand, within B158DRAFT_1963at 97.927 kb on + strand, within B158DRAFT_1963at 97.942 kb on + strand, within B158DRAFT_1963at 97.960 kb on + strand, within B158DRAFT_1963at 97.989 kb on + strand, within B158DRAFT_1963at 97.989 kb on + strand, within B158DRAFT_1963at 97.997 kb on - strand, within B158DRAFT_1963at 97.997 kb on - strand, within B158DRAFT_1963at 97.997 kb on - strand, within B158DRAFT_1963at 97.999 kb on + strand, within B158DRAFT_1963at 98.017 kb on - strand, within B158DRAFT_1963at 98.079 kb on + strand, within B158DRAFT_1963at 98.197 kb on + strand, within B158DRAFT_1963at 98.197 kb on + strand, within B158DRAFT_1963at 98.205 kb on - strand, within B158DRAFT_1963at 98.205 kb on - strand, within B158DRAFT_1963at 98.250 kb on + strand, within B158DRAFT_1963at 98.254 kb on + strand, within B158DRAFT_1963at 98.264 kb on + strand, within B158DRAFT_1963at 98.264 kb on + strand, within B158DRAFT_1963at 98.272 kb on - strand, within B158DRAFT_1963at 98.272 kb on - strand, within B158DRAFT_1963at 98.272 kb on - strand, within B158DRAFT_1963at 98.285 kb on - strand, within B158DRAFT_1963at 98.289 kb on - strand, within B158DRAFT_1963at 98.314 kb on - strand, within B158DRAFT_1963at 98.394 kb on + strand, within B158DRAFT_1963at 98.404 kb on + strand, within B158DRAFT_1963at 98.499 kb on - strandat 98.617 kb on + strandat 98.625 kb on - strandat 98.667 kb on - strandat 98.712 kb on - strand, within B158DRAFT_1964at 98.729 kb on + strand, within B158DRAFT_1964at 98.734 kb on + strand, within B158DRAFT_1964at 98.833 kb on + strand, within B158DRAFT_1964at 98.860 kb on - strand, within B158DRAFT_1964at 98.916 kb on - strand, within B158DRAFT_1964at 98.960 kb on + strand, within B158DRAFT_1964at 99.007 kb on - strand, within B158DRAFT_1964at 99.025 kb on - strand, within B158DRAFT_1964at 99.025 kb on - strand, within B158DRAFT_1964at 99.111 kb on + strand, within B158DRAFT_1964at 99.119 kb on - strand, within B158DRAFT_1964at 99.153 kb on - strandat 99.166 kb on - strandat 99.249 kb on + strandat 99.290 kb on - strandat 99.348 kb on - strandat 99.351 kb on + strandat 99.351 kb on + strandat 99.351 kb on + strandat 99.359 kb on - strandat 99.359 kb on - strandat 99.366 kb on - strandat 99.372 kb on + strandat 99.425 kb on - strandat 99.479 kb on - strandat 99.507 kb on + strandat 99.518 kb on + strandat 99.543 kb on + strandat 99.543 kb on + strandat 99.543 kb on + strandat 99.543 kb on + strandat 99.543 kb on + strandat 99.543 kb on + strandat 99.543 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM
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96,514 - +0.0
96,647 + B158DRAFT_1961 0.20 +0.1
96,677 - B158DRAFT_1961 0.27 -1.6
96,765 + B158DRAFT_1961 0.49 +0.1
96,785 + B158DRAFT_1961 0.54 -0.0
96,854 + B158DRAFT_1961 0.71 -0.2
96,887 + B158DRAFT_1961 0.79 -0.4
96,911 - B158DRAFT_1961 0.85 -0.3
97,035 + B158DRAFT_1962 0.14 -0.0
97,369 + B158DRAFT_1962 0.85 +0.1
97,500 + -0.9
97,502 + -0.4
97,502 + +0.2
97,505 - -0.0
97,576 - B158DRAFT_1963 0.13 -0.2
97,582 + B158DRAFT_1963 0.13 +0.0
97,605 - B158DRAFT_1963 0.15 -0.2
97,605 - B158DRAFT_1963 0.15 -0.7
97,629 - B158DRAFT_1963 0.18 +1.2
97,635 + B158DRAFT_1963 0.18 -1.0
97,643 - B158DRAFT_1963 0.19 +0.2
97,679 + B158DRAFT_1963 0.22 -0.2
97,687 - B158DRAFT_1963 0.23 -0.3
97,693 - B158DRAFT_1963 0.23 +0.8
97,703 - B158DRAFT_1963 0.24 -0.4
97,739 + B158DRAFT_1963 0.27 +0.6
97,739 + B158DRAFT_1963 0.27 +0.1
97,739 + B158DRAFT_1963 0.27 +0.0
97,739 + B158DRAFT_1963 0.27 -0.3
97,739 + B158DRAFT_1963 0.27 +0.1
97,739 + B158DRAFT_1963 0.27 -0.2
97,747 - B158DRAFT_1963 0.28 +1.0
97,749 + B158DRAFT_1963 0.28 -0.0
97,795 + B158DRAFT_1963 0.32 -0.3
97,813 + B158DRAFT_1963 0.34 +0.0
97,819 + B158DRAFT_1963 0.35 +0.0
97,819 + B158DRAFT_1963 0.35 -0.5
97,820 + B158DRAFT_1963 0.35 -0.1
97,827 - B158DRAFT_1963 0.35 +0.4
97,830 + B158DRAFT_1963 0.36 -0.2
97,838 - B158DRAFT_1963 0.36 +0.1
97,927 + B158DRAFT_1963 0.44 +0.3
97,942 + B158DRAFT_1963 0.46 +0.2
97,960 + B158DRAFT_1963 0.47 -0.1
97,989 + B158DRAFT_1963 0.50 -0.2
97,989 + B158DRAFT_1963 0.50 -0.2
97,997 - B158DRAFT_1963 0.51 -1.6
97,997 - B158DRAFT_1963 0.51 -0.5
97,997 - B158DRAFT_1963 0.51 +0.3
97,999 + B158DRAFT_1963 0.51 -0.4
98,017 - B158DRAFT_1963 0.52 +0.2
98,079 + B158DRAFT_1963 0.58 +0.3
98,197 + B158DRAFT_1963 0.68 +0.7
98,197 + B158DRAFT_1963 0.68 -0.2
98,205 - B158DRAFT_1963 0.69 -0.3
98,205 - B158DRAFT_1963 0.69 +0.1
98,250 + B158DRAFT_1963 0.73 +0.2
98,254 + B158DRAFT_1963 0.74 +0.0
98,264 + B158DRAFT_1963 0.74 -0.2
98,264 + B158DRAFT_1963 0.74 -0.4
98,272 - B158DRAFT_1963 0.75 -0.2
98,272 - B158DRAFT_1963 0.75 +0.2
98,272 - B158DRAFT_1963 0.75 +0.4
98,285 - B158DRAFT_1963 0.76 -0.0
98,289 - B158DRAFT_1963 0.77 -0.3
98,314 - B158DRAFT_1963 0.79 +0.2
98,394 + B158DRAFT_1963 0.86 +0.6
98,404 + B158DRAFT_1963 0.87 +0.2
98,499 - -0.5
98,617 + +0.5
98,625 - -0.6
98,667 - -0.2
98,712 - B158DRAFT_1964 0.16 +0.1
98,729 + B158DRAFT_1964 0.19 +0.2
98,734 + B158DRAFT_1964 0.20 -1.2
98,833 + B158DRAFT_1964 0.37 +0.4
98,860 - B158DRAFT_1964 0.42 -0.4
98,916 - B158DRAFT_1964 0.52 +0.2
98,960 + B158DRAFT_1964 0.60 -1.0
99,007 - B158DRAFT_1964 0.68 -0.1
99,025 - B158DRAFT_1964 0.71 +0.6
99,025 - B158DRAFT_1964 0.71 -0.1
99,111 + B158DRAFT_1964 0.86 +0.2
99,119 - B158DRAFT_1964 0.88 +0.3
99,153 - -0.0
99,166 - -0.4
99,249 + +0.2
99,290 - -0.3
99,348 - +0.1
99,351 + -0.3
99,351 + -0.2
99,351 + -0.3
99,359 - -0.2
99,359 - -1.2
99,366 - +0.2
99,372 + +0.8
99,425 - -0.4
99,479 - -0.0
99,507 + +0.9
99,518 + -0.7
99,543 + -0.5
99,543 + +0.0
99,543 + +0.1
99,543 + -0.2
99,543 + +0.6
99,543 + -0.9
99,543 + +0.1

Or see this region's nucleotide sequence