Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1117 and B158DRAFT_1118 are separated by 154 nucleotides B158DRAFT_1118 and B158DRAFT_1119 are separated by 80 nucleotides
B158DRAFT_1117: B158DRAFT_1117 - prolyl-tRNA synthetase (EC 6.1.1.15), at 1,153,873 to 1,155,588
_1117
B158DRAFT_1118: B158DRAFT_1118 - hypothetical protein, at 1,155,743 to 1,155,982
_1118
B158DRAFT_1119: B158DRAFT_1119 - Predicted metal-dependent hydrolase with the TIM-barrel fold, at 1,156,063 to 1,157,712
_1119
Position (kb)
1155
1156 Strain fitness (log2 ratio)
-1
0
1 at 1155.650 kb on - strand at 1155.730 kb on - strand at 1155.799 kb on + strand, within B158DRAFT_1118 at 1155.799 kb on + strand, within B158DRAFT_1118 at 1155.799 kb on + strand, within B158DRAFT_1118 at 1155.804 kb on + strand, within B158DRAFT_1118 at 1155.807 kb on - strand, within B158DRAFT_1118 at 1155.916 kb on + strand, within B158DRAFT_1118 at 1155.916 kb on + strand, within B158DRAFT_1118 at 1155.916 kb on + strand, within B158DRAFT_1118 at 1155.922 kb on - strand, within B158DRAFT_1118 at 1155.924 kb on - strand, within B158DRAFT_1118 at 1155.939 kb on + strand, within B158DRAFT_1118 at 1155.939 kb on + strand, within B158DRAFT_1118 at 1155.959 kb on - strand at 1156.035 kb on - strand at 1156.061 kb on + strand at 1156.066 kb on + strand at 1156.074 kb on - strand at 1156.109 kb on + strand at 1156.117 kb on - strand at 1156.164 kb on - strand at 1156.187 kb on + strand at 1156.192 kb on + strand at 1156.209 kb on + strand at 1156.209 kb on + strand at 1156.214 kb on + strand at 1156.217 kb on - strand at 1156.222 kb on - strand at 1156.300 kb on - strand, within B158DRAFT_1119 at 1156.306 kb on + strand, within B158DRAFT_1119 at 1156.315 kb on + strand, within B158DRAFT_1119 at 1156.315 kb on + strand, within B158DRAFT_1119 at 1156.323 kb on - strand, within B158DRAFT_1119 at 1156.323 kb on - strand, within B158DRAFT_1119 at 1156.364 kb on - strand, within B158DRAFT_1119 at 1156.366 kb on + strand, within B158DRAFT_1119 at 1156.366 kb on + strand, within B158DRAFT_1119 at 1156.366 kb on + strand, within B158DRAFT_1119 at 1156.374 kb on - strand, within B158DRAFT_1119 at 1156.454 kb on - strand, within B158DRAFT_1119 at 1156.457 kb on + strand, within B158DRAFT_1119 at 1156.557 kb on + strand, within B158DRAFT_1119 at 1156.586 kb on - strand, within B158DRAFT_1119 at 1156.623 kb on - strand, within B158DRAFT_1119 at 1156.746 kb on + strand, within B158DRAFT_1119 at 1156.746 kb on + strand, within B158DRAFT_1119 at 1156.754 kb on - strand, within B158DRAFT_1119 at 1156.754 kb on - strand, within B158DRAFT_1119 at 1156.770 kb on - strand, within B158DRAFT_1119 at 1156.806 kb on + strand, within B158DRAFT_1119 at 1156.844 kb on - strand, within B158DRAFT_1119 at 1156.870 kb on - strand, within B158DRAFT_1119 at 1156.930 kb on - strand, within B158DRAFT_1119 at 1156.944 kb on + strand, within B158DRAFT_1119 at 1156.944 kb on + strand, within B158DRAFT_1119 at 1156.952 kb on - strand, within B158DRAFT_1119 at 1156.952 kb on - strand, within B158DRAFT_1119 at 1156.952 kb on - strand, within B158DRAFT_1119 at 1156.952 kb on - strand, within B158DRAFT_1119 at 1156.952 kb on - strand, within B158DRAFT_1119 at 1156.952 kb on - strand, within B158DRAFT_1119 at 1156.952 kb on - strand, within B158DRAFT_1119
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 1,155,650 - +1.1 1,155,730 - -0.3 1,155,799 + B158DRAFT_1118 0.23 -0.4 1,155,799 + B158DRAFT_1118 0.23 +1.1 1,155,799 + B158DRAFT_1118 0.23 +0.1 1,155,804 + B158DRAFT_1118 0.25 -0.3 1,155,807 - B158DRAFT_1118 0.27 -0.1 1,155,916 + B158DRAFT_1118 0.72 +0.4 1,155,916 + B158DRAFT_1118 0.72 -0.3 1,155,916 + B158DRAFT_1118 0.72 +0.6 1,155,922 - B158DRAFT_1118 0.75 -0.1 1,155,924 - B158DRAFT_1118 0.75 -0.4 1,155,939 + B158DRAFT_1118 0.82 -0.3 1,155,939 + B158DRAFT_1118 0.82 +0.3 1,155,959 - +0.0 1,156,035 - -0.6 1,156,061 + -0.9 1,156,066 + -1.3 1,156,074 - -0.3 1,156,109 + -0.3 1,156,117 - +0.3 1,156,164 - -0.4 1,156,187 + -0.7 1,156,192 + +0.7 1,156,209 + -0.7 1,156,209 + -0.1 1,156,214 + -0.0 1,156,217 - -1.5 1,156,222 - -0.3 1,156,300 - B158DRAFT_1119 0.14 -0.9 1,156,306 + B158DRAFT_1119 0.15 -0.2 1,156,315 + B158DRAFT_1119 0.15 +0.3 1,156,315 + B158DRAFT_1119 0.15 +0.6 1,156,323 - B158DRAFT_1119 0.16 -0.9 1,156,323 - B158DRAFT_1119 0.16 -1.2 1,156,364 - B158DRAFT_1119 0.18 -1.0 1,156,366 + B158DRAFT_1119 0.18 -0.6 1,156,366 + B158DRAFT_1119 0.18 -0.2 1,156,366 + B158DRAFT_1119 0.18 -1.1 1,156,374 - B158DRAFT_1119 0.19 -0.2 1,156,454 - B158DRAFT_1119 0.24 -0.2 1,156,457 + B158DRAFT_1119 0.24 -0.0 1,156,557 + B158DRAFT_1119 0.30 +0.0 1,156,586 - B158DRAFT_1119 0.32 -0.2 1,156,623 - B158DRAFT_1119 0.34 -0.8 1,156,746 + B158DRAFT_1119 0.41 +0.1 1,156,746 + B158DRAFT_1119 0.41 -0.0 1,156,754 - B158DRAFT_1119 0.42 -0.1 1,156,754 - B158DRAFT_1119 0.42 -1.1 1,156,770 - B158DRAFT_1119 0.43 -0.5 1,156,806 + B158DRAFT_1119 0.45 +0.2 1,156,844 - B158DRAFT_1119 0.47 +0.0 1,156,870 - B158DRAFT_1119 0.49 -0.0 1,156,930 - B158DRAFT_1119 0.53 -0.2 1,156,944 + B158DRAFT_1119 0.53 -0.3 1,156,944 + B158DRAFT_1119 0.53 -0.2 1,156,952 - B158DRAFT_1119 0.54 +0.5 1,156,952 - B158DRAFT_1119 0.54 -0.2 1,156,952 - B158DRAFT_1119 0.54 -0.8 1,156,952 - B158DRAFT_1119 0.54 -0.2 1,156,952 - B158DRAFT_1119 0.54 +0.5 1,156,952 - B158DRAFT_1119 0.54 +0.4 1,156,952 - B158DRAFT_1119 0.54 -0.4
Or see this region's nucleotide sequence