Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3041 and Atu3042 are separated by 115 nucleotides Atu3042 and Atu3043 overlap by 4 nucleotides
Atu3041: Atu3041 - dipeptide ABC transporter substrate-binding protein, at 36,341 to 37,954
Atu3041
Atu3042: Atu3042 - hypothetical protein, at 38,070 to 39,146
Atu3042
Atu3043: Atu3043 - hydantoinase beta subunit-like protein, at 39,143 to 40,681
Atu3043
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 37.072 kb on - strand, within Atu3041 at 37.128 kb on + strand, within Atu3041 at 37.176 kb on - strand, within Atu3041 at 37.194 kb on - strand, within Atu3041 at 37.217 kb on + strand, within Atu3041 at 37.234 kb on + strand, within Atu3041 at 37.235 kb on - strand, within Atu3041 at 37.288 kb on + strand, within Atu3041 at 37.296 kb on - strand, within Atu3041 at 37.405 kb on + strand, within Atu3041 at 37.455 kb on - strand, within Atu3041 at 37.464 kb on - strand, within Atu3041 at 37.464 kb on - strand, within Atu3041 at 37.518 kb on + strand, within Atu3041 at 37.526 kb on - strand, within Atu3041 at 37.618 kb on + strand, within Atu3041 at 37.624 kb on + strand, within Atu3041 at 37.659 kb on + strand, within Atu3041 at 37.677 kb on - strand, within Atu3041 at 37.824 kb on - strand at 37.828 kb on + strand at 37.852 kb on + strand at 37.879 kb on + strand at 37.910 kb on + strand at 37.964 kb on + strand at 38.025 kb on - strand at 38.044 kb on + strand at 38.215 kb on - strand, within Atu3042 at 38.223 kb on - strand, within Atu3042 at 38.289 kb on + strand, within Atu3042 at 38.330 kb on - strand, within Atu3042 at 38.397 kb on + strand, within Atu3042 at 38.397 kb on + strand, within Atu3042 at 38.475 kb on + strand, within Atu3042 at 38.681 kb on + strand, within Atu3042 at 38.792 kb on + strand, within Atu3042 at 38.833 kb on + strand, within Atu3042 at 39.027 kb on - strand, within Atu3042 at 39.037 kb on - strand, within Atu3042 at 39.039 kb on + strand at 39.081 kb on - strand at 39.156 kb on + strand at 39.164 kb on - strand at 39.245 kb on + strand at 39.258 kb on - strand at 39.263 kb on - strand at 39.330 kb on + strand, within Atu3043 at 39.338 kb on - strand, within Atu3043 at 39.361 kb on - strand, within Atu3043 at 39.391 kb on + strand, within Atu3043 at 39.393 kb on + strand, within Atu3043 at 39.454 kb on - strand, within Atu3043 at 39.454 kb on - strand, within Atu3043 at 39.467 kb on + strand, within Atu3043 at 39.624 kb on + strand, within Atu3043 at 39.673 kb on + strand, within Atu3043 at 39.681 kb on - strand, within Atu3043 at 39.692 kb on - strand, within Atu3043 at 39.705 kb on + strand, within Atu3043 at 39.705 kb on + strand, within Atu3043 at 39.733 kb on + strand, within Atu3043 at 39.741 kb on - strand, within Atu3043 at 39.751 kb on - strand, within Atu3043 at 39.753 kb on + strand, within Atu3043 at 39.822 kb on + strand, within Atu3043 at 39.878 kb on + strand, within Atu3043 at 39.899 kb on - strand, within Atu3043 at 39.923 kb on + strand, within Atu3043 at 40.068 kb on + strand, within Atu3043
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 37,072 - Atu3041 0.45 +0.1 37,128 + Atu3041 0.49 -0.6 37,176 - Atu3041 0.52 -0.4 37,194 - Atu3041 0.53 -0.5 37,217 + Atu3041 0.54 +1.2 37,234 + Atu3041 0.55 -0.3 37,235 - Atu3041 0.55 -0.4 37,288 + Atu3041 0.59 +0.1 37,296 - Atu3041 0.59 -0.3 37,405 + Atu3041 0.66 -0.8 37,455 - Atu3041 0.69 +0.5 37,464 - Atu3041 0.70 -0.5 37,464 - Atu3041 0.70 -3.6 37,518 + Atu3041 0.73 +0.1 37,526 - Atu3041 0.73 +0.4 37,618 + Atu3041 0.79 -1.3 37,624 + Atu3041 0.79 -0.4 37,659 + Atu3041 0.82 -1.2 37,677 - Atu3041 0.83 -1.0 37,824 - +0.7 37,828 + -0.4 37,852 + -0.1 37,879 + -0.9 37,910 + -1.3 37,964 + -0.4 38,025 - -0.3 38,044 + +0.5 38,215 - Atu3042 0.13 -1.1 38,223 - Atu3042 0.14 -0.4 38,289 + Atu3042 0.20 -0.9 38,330 - Atu3042 0.24 -0.3 38,397 + Atu3042 0.30 -0.5 38,397 + Atu3042 0.30 +0.3 38,475 + Atu3042 0.38 -0.3 38,681 + Atu3042 0.57 -0.6 38,792 + Atu3042 0.67 -0.5 38,833 + Atu3042 0.71 +0.4 39,027 - Atu3042 0.89 -1.0 39,037 - Atu3042 0.90 -0.4 39,039 + -1.9 39,081 - -1.5 39,156 + -0.0 39,164 - -0.3 39,245 + -0.5 39,258 - -0.7 39,263 - -0.4 39,330 + Atu3043 0.12 -0.8 39,338 - Atu3043 0.13 -1.3 39,361 - Atu3043 0.14 -0.8 39,391 + Atu3043 0.16 -0.5 39,393 + Atu3043 0.16 -0.5 39,454 - Atu3043 0.20 +0.9 39,454 - Atu3043 0.20 +0.3 39,467 + Atu3043 0.21 -0.9 39,624 + Atu3043 0.31 +0.3 39,673 + Atu3043 0.34 +0.6 39,681 - Atu3043 0.35 -0.4 39,692 - Atu3043 0.36 -0.3 39,705 + Atu3043 0.37 +0.8 39,705 + Atu3043 0.37 -0.1 39,733 + Atu3043 0.38 +0.7 39,741 - Atu3043 0.39 +0.5 39,751 - Atu3043 0.40 -0.5 39,753 + Atu3043 0.40 +0.5 39,822 + Atu3043 0.44 -0.5 39,878 + Atu3043 0.48 -0.7 39,899 - Atu3043 0.49 -0.4 39,923 + Atu3043 0.51 -0.5 40,068 + Atu3043 0.60 -0.5
Or see this region's nucleotide sequence