Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3040 and Atu3041 are separated by 43 nucleotides Atu3041 and Atu3042 are separated by 115 nucleotides
Atu3040: Atu3040 - hypothetical protein, at 35,164 to 36,297
Atu3040
Atu3041: Atu3041 - dipeptide ABC transporter substrate-binding protein, at 36,341 to 37,954
Atu3041
Atu3042: Atu3042 - hypothetical protein, at 38,070 to 39,146
Atu3042
Position (kb) 36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 35.362 kb on - strand, within Atu3040 at 35.373 kb on + strand, within Atu3040 at 35.401 kb on + strand, within Atu3040 at 35.440 kb on + strand, within Atu3040 at 35.448 kb on - strand, within Atu3040 at 35.551 kb on - strand, within Atu3040 at 35.665 kb on + strand, within Atu3040 at 35.677 kb on + strand, within Atu3040 at 35.680 kb on + strand, within Atu3040 at 35.719 kb on + strand, within Atu3040 at 35.725 kb on + strand, within Atu3040 at 35.727 kb on - strand, within Atu3040 at 35.733 kb on - strand, within Atu3040 at 35.797 kb on + strand, within Atu3040 at 35.805 kb on - strand, within Atu3040 at 35.892 kb on + strand, within Atu3040 at 35.989 kb on - strand, within Atu3040 at 35.999 kb on - strand, within Atu3040 at 36.127 kb on - strand, within Atu3040 at 36.190 kb on + strand at 36.243 kb on - strand at 36.243 kb on - strand at 36.290 kb on - strand at 36.290 kb on - strand at 36.290 kb on - strand at 36.375 kb on - strand at 36.469 kb on + strand at 36.588 kb on - strand, within Atu3041 at 36.634 kb on + strand, within Atu3041 at 36.642 kb on + strand, within Atu3041 at 36.642 kb on + strand, within Atu3041 at 36.650 kb on - strand, within Atu3041 at 36.650 kb on - strand, within Atu3041 at 36.650 kb on - strand, within Atu3041 at 36.798 kb on + strand, within Atu3041 at 36.862 kb on - strand, within Atu3041 at 36.918 kb on - strand, within Atu3041 at 36.923 kb on + strand, within Atu3041 at 36.925 kb on - strand, within Atu3041 at 36.948 kb on + strand, within Atu3041 at 36.995 kb on + strand, within Atu3041 at 37.064 kb on + strand, within Atu3041 at 37.072 kb on - strand, within Atu3041 at 37.128 kb on + strand, within Atu3041 at 37.176 kb on - strand, within Atu3041 at 37.194 kb on - strand, within Atu3041 at 37.217 kb on + strand, within Atu3041 at 37.234 kb on + strand, within Atu3041 at 37.235 kb on - strand, within Atu3041 at 37.288 kb on + strand, within Atu3041 at 37.296 kb on - strand, within Atu3041 at 37.405 kb on + strand, within Atu3041 at 37.455 kb on - strand, within Atu3041 at 37.464 kb on - strand, within Atu3041 at 37.464 kb on - strand, within Atu3041 at 37.518 kb on + strand, within Atu3041 at 37.526 kb on - strand, within Atu3041 at 37.618 kb on + strand, within Atu3041 at 37.624 kb on + strand, within Atu3041 at 37.659 kb on + strand, within Atu3041 at 37.677 kb on - strand, within Atu3041 at 37.824 kb on - strand at 37.828 kb on + strand at 37.852 kb on + strand at 37.879 kb on + strand at 37.910 kb on + strand at 37.964 kb on + strand at 38.025 kb on - strand at 38.044 kb on + strand at 38.215 kb on - strand, within Atu3042 at 38.223 kb on - strand, within Atu3042 at 38.289 kb on + strand, within Atu3042 at 38.330 kb on - strand, within Atu3042 at 38.397 kb on + strand, within Atu3042 at 38.397 kb on + strand, within Atu3042 at 38.475 kb on + strand, within Atu3042 at 38.681 kb on + strand, within Atu3042 at 38.792 kb on + strand, within Atu3042 at 38.833 kb on + strand, within Atu3042
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 35,362 - Atu3040 0.17 -0.6 35,373 + Atu3040 0.18 -1.5 35,401 + Atu3040 0.21 -0.2 35,440 + Atu3040 0.24 -0.5 35,448 - Atu3040 0.25 -0.4 35,551 - Atu3040 0.34 -1.7 35,665 + Atu3040 0.44 -0.8 35,677 + Atu3040 0.45 +0.1 35,680 + Atu3040 0.46 -0.1 35,719 + Atu3040 0.49 -0.6 35,725 + Atu3040 0.49 -0.1 35,727 - Atu3040 0.50 -0.4 35,733 - Atu3040 0.50 -0.8 35,797 + Atu3040 0.56 -1.2 35,805 - Atu3040 0.57 -0.3 35,892 + Atu3040 0.64 -0.3 35,989 - Atu3040 0.73 +0.2 35,999 - Atu3040 0.74 -0.6 36,127 - Atu3040 0.85 -0.1 36,190 + -0.8 36,243 - -0.1 36,243 - -0.6 36,290 - +0.1 36,290 - -1.5 36,290 - +1.2 36,375 - -0.5 36,469 + -0.5 36,588 - Atu3041 0.15 -0.9 36,634 + Atu3041 0.18 +0.3 36,642 + Atu3041 0.19 -0.0 36,642 + Atu3041 0.19 -0.5 36,650 - Atu3041 0.19 -0.7 36,650 - Atu3041 0.19 -0.3 36,650 - Atu3041 0.19 -0.7 36,798 + Atu3041 0.28 +0.4 36,862 - Atu3041 0.32 -0.7 36,918 - Atu3041 0.36 -2.3 36,923 + Atu3041 0.36 -0.3 36,925 - Atu3041 0.36 -0.2 36,948 + Atu3041 0.38 -0.2 36,995 + Atu3041 0.41 -0.8 37,064 + Atu3041 0.45 -0.5 37,072 - Atu3041 0.45 +0.1 37,128 + Atu3041 0.49 -0.6 37,176 - Atu3041 0.52 -0.4 37,194 - Atu3041 0.53 -0.5 37,217 + Atu3041 0.54 +1.2 37,234 + Atu3041 0.55 -0.3 37,235 - Atu3041 0.55 -0.4 37,288 + Atu3041 0.59 +0.1 37,296 - Atu3041 0.59 -0.3 37,405 + Atu3041 0.66 -0.8 37,455 - Atu3041 0.69 +0.5 37,464 - Atu3041 0.70 -0.5 37,464 - Atu3041 0.70 -3.6 37,518 + Atu3041 0.73 +0.1 37,526 - Atu3041 0.73 +0.4 37,618 + Atu3041 0.79 -1.3 37,624 + Atu3041 0.79 -0.4 37,659 + Atu3041 0.82 -1.2 37,677 - Atu3041 0.83 -1.0 37,824 - +0.7 37,828 + -0.4 37,852 + -0.1 37,879 + -0.9 37,910 + -1.3 37,964 + -0.4 38,025 - -0.3 38,044 + +0.5 38,215 - Atu3042 0.13 -1.1 38,223 - Atu3042 0.14 -0.4 38,289 + Atu3042 0.20 -0.9 38,330 - Atu3042 0.24 -0.3 38,397 + Atu3042 0.30 -0.5 38,397 + Atu3042 0.30 +0.3 38,475 + Atu3042 0.38 -0.3 38,681 + Atu3042 0.57 -0.6 38,792 + Atu3042 0.67 -0.5 38,833 + Atu3042 0.71 +0.4
Or see this region's nucleotide sequence