Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29425

Experiment: R2A outgrowth control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS29415 and ABID97_RS29420 are separated by 85 nucleotidesABID97_RS29420 and ABID97_RS29425 are separated by 192 nucleotidesABID97_RS29425 and ABID97_RS29430 are separated by 149 nucleotides ABID97_RS29415: ABID97_RS29415 - carboxymuconolactone decarboxylase family protein, at 807,087 to 807,752 _RS29415 ABID97_RS29420: ABID97_RS29420 - cupin domain-containing protein, at 807,838 to 808,281 _RS29420 ABID97_RS29425: ABID97_RS29425 - LysR family transcriptional regulator, at 808,474 to 809,388 _RS29425 ABID97_RS29430: ABID97_RS29430 - GMC family oxidoreductase N-terminal domain-containing protein, at 809,538 to 811,139 _RS29430 Position (kb) 808 809 810Strain fitness (log2 ratio) -1 0 1 2at 807.580 kb on + strand, within ABID97_RS29415at 807.580 kb on + strand, within ABID97_RS29415at 807.581 kb on - strand, within ABID97_RS29415at 807.855 kb on - strandat 808.187 kb on + strand, within ABID97_RS29420at 808.455 kb on - strandat 808.864 kb on + strand, within ABID97_RS29425at 809.201 kb on - strand, within ABID97_RS29425at 809.820 kb on + strand, within ABID97_RS29430at 809.820 kb on + strand, within ABID97_RS29430at 809.844 kb on + strand, within ABID97_RS29430at 810.135 kb on + strand, within ABID97_RS29430at 810.136 kb on - strand, within ABID97_RS29430

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
remove
807,580 + ABID97_RS29415 0.74 +0.4
807,580 + ABID97_RS29415 0.74 +0.0
807,581 - ABID97_RS29415 0.74 -0.2
807,855 - +0.1
808,187 + ABID97_RS29420 0.79 -0.5
808,455 - +0.6
808,864 + ABID97_RS29425 0.43 +0.7
809,201 - ABID97_RS29425 0.79 -0.1
809,820 + ABID97_RS29430 0.18 +0.2
809,820 + ABID97_RS29430 0.18 +1.9
809,844 + ABID97_RS29430 0.19 +1.0
810,135 + ABID97_RS29430 0.37 +0.7
810,136 - ABID97_RS29430 0.37 +1.3

Or see this region's nucleotide sequence