Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28535 and ABID97_RS28540 are separated by 49 nucleotides ABID97_RS28540 and ABID97_RS28545 are separated by 32 nucleotides ABID97_RS28545 and ABID97_RS28550 are separated by 72 nucleotides ABID97_RS28550 and ABID97_RS28555 are separated by 84 nucleotides
ABID97_RS28535: ABID97_RS28535 - serine hydrolase, at 627,741 to 628,844
_RS28535
ABID97_RS28540: ABID97_RS28540 - hypothetical protein, at 628,894 to 629,172
_RS28540
ABID97_RS28545: ABID97_RS28545 - hypothetical protein, at 629,205 to 629,606
_RS28545
ABID97_RS28550: ABID97_RS28550 - VOC family protein, at 629,679 to 630,083
_RS28550
ABID97_RS28555: ABID97_RS28555 - methyltransferase domain-containing protein, at 630,168 to 630,980
_RS28555
Position (kb) 629
630
631 Strain fitness (log2 ratio) -1
0
1 at 628.900 kb on - strand at 629.024 kb on + strand, within ABID97_RS28540 at 629.054 kb on - strand, within ABID97_RS28540 at 629.195 kb on + strand at 629.195 kb on + strand at 629.195 kb on + strand at 629.278 kb on + strand, within ABID97_RS28545 at 629.279 kb on - strand, within ABID97_RS28545 at 629.602 kb on + strand at 629.603 kb on - strand at 629.603 kb on - strand at 629.603 kb on - strand at 629.746 kb on + strand, within ABID97_RS28550 at 629.747 kb on - strand, within ABID97_RS28550 at 629.755 kb on + strand, within ABID97_RS28550 at 629.758 kb on + strand, within ABID97_RS28550 at 629.758 kb on + strand, within ABID97_RS28550 at 629.758 kb on + strand, within ABID97_RS28550 at 629.759 kb on - strand, within ABID97_RS28550 at 630.144 kb on + strand at 630.211 kb on + strand at 630.212 kb on - strand at 630.464 kb on - strand, within ABID97_RS28555 at 630.758 kb on - strand, within ABID97_RS28555 at 630.934 kb on + strand at 630.935 kb on - strand at 631.033 kb on + strand at 631.034 kb on - strand at 631.034 kb on - strand at 631.034 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 628,900 - -0.5 629,024 + ABID97_RS28540 0.47 +0.6 629,054 - ABID97_RS28540 0.57 -0.2 629,195 + +0.5 629,195 + -0.6 629,195 + -0.8 629,278 + ABID97_RS28545 0.18 +0.4 629,279 - ABID97_RS28545 0.18 -0.3 629,602 + -0.4 629,603 - +0.7 629,603 - -0.3 629,603 - -0.2 629,746 + ABID97_RS28550 0.17 -0.2 629,747 - ABID97_RS28550 0.17 +0.3 629,755 + ABID97_RS28550 0.19 -0.3 629,758 + ABID97_RS28550 0.20 -1.0 629,758 + ABID97_RS28550 0.20 -0.4 629,758 + ABID97_RS28550 0.20 -0.2 629,759 - ABID97_RS28550 0.20 -0.3 630,144 + -0.2 630,211 + -0.2 630,212 - -0.2 630,464 - ABID97_RS28555 0.36 -1.4 630,758 - ABID97_RS28555 0.73 -0.4 630,934 + -0.0 630,935 - +0.3 631,033 + -0.2 631,034 - -0.3 631,034 - +0.5 631,034 - -0.3
Or see this region's nucleotide sequence