Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25690

Experiment: R2A outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25685 and ABID97_RS25690 are separated by 29 nucleotidesABID97_RS25690 and ABID97_RS25695 are separated by 22 nucleotides ABID97_RS25685: ABID97_RS25685 - four-carbon acid sugar kinase family protein, at 55,992 to 57,059 _RS25685 ABID97_RS25690: ABID97_RS25690 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 57,089 to 58,051 _RS25690 ABID97_RS25695: ABID97_RS25695 - cupin domain-containing protein, at 58,074 to 59,054 _RS25695 Position (kb) 57 58 59Strain fitness (log2 ratio) -1 0 1at 56.229 kb on + strand, within ABID97_RS25685at 56.230 kb on - strand, within ABID97_RS25685at 56.230 kb on - strand, within ABID97_RS25685at 56.401 kb on - strand, within ABID97_RS25685at 56.401 kb on - strand, within ABID97_RS25685at 57.464 kb on - strand, within ABID97_RS25690at 57.783 kb on - strand, within ABID97_RS25690at 58.082 kb on - strandat 58.254 kb on + strand, within ABID97_RS25695at 58.393 kb on - strand, within ABID97_RS25695at 58.585 kb on - strand, within ABID97_RS25695

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
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56,229 + ABID97_RS25685 0.22 -0.5
56,230 - ABID97_RS25685 0.22 +1.5
56,230 - ABID97_RS25685 0.22 +0.2
56,401 - ABID97_RS25685 0.38 -0.2
56,401 - ABID97_RS25685 0.38 -0.0
57,464 - ABID97_RS25690 0.39 -0.6
57,783 - ABID97_RS25690 0.72 +0.2
58,082 - -1.0
58,254 + ABID97_RS25695 0.18 -0.1
58,393 - ABID97_RS25695 0.33 -0.0
58,585 - ABID97_RS25695 0.52 -1.6

Or see this region's nucleotide sequence