Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25605 and ABID97_RS25610 are separated by 92 nucleotides ABID97_RS25610 and ABID97_RS25615 are separated by 266 nucleotides
ABID97_RS25605: ABID97_RS25605 - GGDEF domain-containing protein, at 39,643 to 41,103
_RS25605
ABID97_RS25610: ABID97_RS25610 - methyltransferase, TIGR04325 family, at 41,196 to 42,014
_RS25610
ABID97_RS25615: ABID97_RS25615 - DUF4331 domain-containing protein, at 42,281 to 43,765
_RS25615
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1 at 40.275 kb on - strand, within ABID97_RS25605 at 40.698 kb on - strand, within ABID97_RS25605 at 40.812 kb on - strand, within ABID97_RS25605 at 41.036 kb on + strand at 41.037 kb on - strand at 41.221 kb on + strand at 41.222 kb on - strand at 41.222 kb on - strand at 41.341 kb on + strand, within ABID97_RS25610 at 41.342 kb on - strand, within ABID97_RS25610 at 41.393 kb on - strand, within ABID97_RS25610 at 41.393 kb on - strand, within ABID97_RS25610 at 41.393 kb on - strand, within ABID97_RS25610 at 41.408 kb on - strand, within ABID97_RS25610 at 41.668 kb on + strand, within ABID97_RS25610 at 41.683 kb on + strand, within ABID97_RS25610 at 41.683 kb on + strand, within ABID97_RS25610 at 41.684 kb on - strand, within ABID97_RS25610 at 41.810 kb on - strand, within ABID97_RS25610 at 42.007 kb on + strand at 42.008 kb on - strand at 42.069 kb on - strand at 42.232 kb on - strand at 42.452 kb on + strand, within ABID97_RS25615 at 42.474 kb on - strand, within ABID97_RS25615 at 42.474 kb on - strand, within ABID97_RS25615 at 42.509 kb on + strand, within ABID97_RS25615 at 42.848 kb on + strand, within ABID97_RS25615 at 42.876 kb on - strand, within ABID97_RS25615
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 40,275 - ABID97_RS25605 0.43 +0.1 40,698 - ABID97_RS25605 0.72 +0.6 40,812 - ABID97_RS25605 0.80 -0.2 41,036 + +0.6 41,037 - +0.4 41,221 + +0.1 41,222 - -0.6 41,222 - -0.3 41,341 + ABID97_RS25610 0.18 +0.4 41,342 - ABID97_RS25610 0.18 +0.4 41,393 - ABID97_RS25610 0.24 +0.2 41,393 - ABID97_RS25610 0.24 +0.4 41,393 - ABID97_RS25610 0.24 -2.6 41,408 - ABID97_RS25610 0.26 +0.4 41,668 + ABID97_RS25610 0.58 +0.9 41,683 + ABID97_RS25610 0.59 +0.2 41,683 + ABID97_RS25610 0.59 +0.7 41,684 - ABID97_RS25610 0.60 -0.5 41,810 - ABID97_RS25610 0.75 -0.1 42,007 + -0.5 42,008 - +0.4 42,069 - +0.1 42,232 - +0.5 42,452 + ABID97_RS25615 0.12 -0.1 42,474 - ABID97_RS25615 0.13 -0.6 42,474 - ABID97_RS25615 0.13 +0.5 42,509 + ABID97_RS25615 0.15 +0.3 42,848 + ABID97_RS25615 0.38 -0.2 42,876 - ABID97_RS25615 0.40 +0.0
Or see this region's nucleotide sequence