Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24145 and ABID97_RS24150 are separated by 61 nucleotides ABID97_RS24150 and ABID97_RS24155 overlap by 4 nucleotides ABID97_RS24155 and ABID97_RS24160 are separated by 143 nucleotides ABID97_RS24160 and ABID97_RS24165 are separated by 40 nucleotides
ABID97_RS24145: ABID97_RS24145 - RNA repair transcriptional activator RtcR, at 4,989,520 to 4,991,133
_RS24145
ABID97_RS24150: ABID97_RS24150 - alpha/beta hydrolase, at 4,991,195 to 4,992,031
_RS24150
ABID97_RS24155: ABID97_RS24155 - ornithine cyclodeaminase family protein, at 4,992,028 to 4,992,975
_RS24155
ABID97_RS24160: ABID97_RS24160 - hypothetical protein, at 4,993,119 to 4,993,373
_RS24160
ABID97_RS24165: ABID97_RS24165 - cytochrome c biogenesis protein CcdA, at 4,993,414 to 4,995,237
_RS24165
Position (kb) 4992
4993 Strain fitness (log2 ratio) -1
0
1 at 4991.087 kb on - strand at 4991.087 kb on - strand at 4991.087 kb on - strand at 4991.141 kb on - strand at 4991.141 kb on - strand at 4991.141 kb on - strand at 4991.264 kb on + strand at 4991.264 kb on + strand at 4991.264 kb on + strand at 4991.265 kb on - strand at 4991.265 kb on - strand at 4991.285 kb on + strand, within ABID97_RS24150 at 4991.723 kb on + strand, within ABID97_RS24150 at 4991.724 kb on - strand, within ABID97_RS24150 at 4991.729 kb on + strand, within ABID97_RS24150 at 4991.802 kb on - strand, within ABID97_RS24150 at 4991.975 kb on + strand at 4991.975 kb on + strand at 4991.975 kb on + strand at 4991.976 kb on - strand at 4992.280 kb on + strand, within ABID97_RS24155 at 4992.280 kb on + strand, within ABID97_RS24155 at 4992.280 kb on + strand, within ABID97_RS24155 at 4992.280 kb on + strand, within ABID97_RS24155 at 4992.281 kb on - strand, within ABID97_RS24155 at 4992.281 kb on - strand, within ABID97_RS24155 at 4992.281 kb on - strand, within ABID97_RS24155 at 4992.281 kb on - strand, within ABID97_RS24155 at 4992.289 kb on + strand, within ABID97_RS24155 at 4992.981 kb on - strand at 4993.040 kb on + strand at 4993.040 kb on + strand at 4993.040 kb on + strand at 4993.041 kb on - strand at 4993.041 kb on - strand at 4993.079 kb on + strand at 4993.263 kb on + strand, within ABID97_RS24160 at 4993.264 kb on - strand, within ABID97_RS24160 at 4993.264 kb on - strand, within ABID97_RS24160 at 4993.264 kb on - strand, within ABID97_RS24160 at 4993.264 kb on - strand, within ABID97_RS24160 at 4993.273 kb on - strand, within ABID97_RS24160 at 4993.273 kb on - strand, within ABID97_RS24160 at 4993.433 kb on + strand at 4993.433 kb on + strand at 4993.433 kb on + strand at 4993.433 kb on + strand at 4993.434 kb on - strand at 4993.779 kb on - strand, within ABID97_RS24165 at 4993.847 kb on + strand, within ABID97_RS24165 at 4993.848 kb on - strand, within ABID97_RS24165 at 4993.848 kb on - strand, within ABID97_RS24165 at 4993.894 kb on - strand, within ABID97_RS24165
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 4,991,087 - -0.3 4,991,087 - +1.1 4,991,087 - +0.6 4,991,141 - -0.1 4,991,141 - -0.5 4,991,141 - +0.0 4,991,264 + -0.0 4,991,264 + +0.3 4,991,264 + -0.2 4,991,265 - +0.7 4,991,265 - -0.1 4,991,285 + ABID97_RS24150 0.11 +0.0 4,991,723 + ABID97_RS24150 0.63 -0.3 4,991,724 - ABID97_RS24150 0.63 -1.0 4,991,729 + ABID97_RS24150 0.64 +0.1 4,991,802 - ABID97_RS24150 0.73 +1.5 4,991,975 + +0.4 4,991,975 + -1.5 4,991,975 + -0.6 4,991,976 - +0.8 4,992,280 + ABID97_RS24155 0.27 +0.4 4,992,280 + ABID97_RS24155 0.27 +0.8 4,992,280 + ABID97_RS24155 0.27 +0.2 4,992,280 + ABID97_RS24155 0.27 +0.4 4,992,281 - ABID97_RS24155 0.27 -0.4 4,992,281 - ABID97_RS24155 0.27 +0.7 4,992,281 - ABID97_RS24155 0.27 +0.2 4,992,281 - ABID97_RS24155 0.27 +0.2 4,992,289 + ABID97_RS24155 0.28 -0.3 4,992,981 - -1.0 4,993,040 + +0.2 4,993,040 + +0.5 4,993,040 + -0.6 4,993,041 - +0.7 4,993,041 - +0.2 4,993,079 + -0.0 4,993,263 + ABID97_RS24160 0.56 +0.1 4,993,264 - ABID97_RS24160 0.57 -0.4 4,993,264 - ABID97_RS24160 0.57 -0.4 4,993,264 - ABID97_RS24160 0.57 +0.6 4,993,264 - ABID97_RS24160 0.57 -0.2 4,993,273 - ABID97_RS24160 0.60 -0.2 4,993,273 - ABID97_RS24160 0.60 +0.1 4,993,433 + -1.0 4,993,433 + +0.6 4,993,433 + -0.0 4,993,433 + +0.2 4,993,434 - -0.2 4,993,779 - ABID97_RS24165 0.20 -0.1 4,993,847 + ABID97_RS24165 0.24 +0.1 4,993,848 - ABID97_RS24165 0.24 -0.2 4,993,848 - ABID97_RS24165 0.24 +0.3 4,993,894 - ABID97_RS24165 0.26 -0.6
Or see this region's nucleotide sequence