Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19480

Experiment: R2A outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19470 and ABID97_RS19475 are separated by 13 nucleotidesABID97_RS19475 and ABID97_RS19480 are separated by 58 nucleotidesABID97_RS19480 and ABID97_RS19485 are separated by 105 nucleotides ABID97_RS19470: ABID97_RS19470 - LysR family transcriptional regulator, at 4,019,255 to 4,020,166 _RS19470 ABID97_RS19475: ABID97_RS19475 - NADPH-dependent FMN reductase, at 4,020,180 to 4,020,740 _RS19475 ABID97_RS19480: ABID97_RS19480 - LysR family transcriptional regulator, at 4,020,799 to 4,021,743 _RS19480 ABID97_RS19485: ABID97_RS19485 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 4,021,849 to 4,023,357 _RS19485 Position (kb) 4020 4021 4022Strain fitness (log2 ratio) -1 0 1at 4020.328 kb on - strand, within ABID97_RS19475at 4020.328 kb on - strand, within ABID97_RS19475at 4020.328 kb on - strand, within ABID97_RS19475at 4020.503 kb on - strand, within ABID97_RS19475at 4020.890 kb on - strandat 4020.896 kb on + strand, within ABID97_RS19480at 4021.214 kb on + strand, within ABID97_RS19480at 4021.671 kb on - strandat 4021.790 kb on + strandat 4022.016 kb on + strand, within ABID97_RS19485at 4022.545 kb on + strand, within ABID97_RS19485at 4022.546 kb on - strand, within ABID97_RS19485at 4022.546 kb on - strand, within ABID97_RS19485at 4022.551 kb on + strand, within ABID97_RS19485

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
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4,020,328 - ABID97_RS19475 0.26 -0.0
4,020,328 - ABID97_RS19475 0.26 -0.7
4,020,328 - ABID97_RS19475 0.26 -0.4
4,020,503 - ABID97_RS19475 0.58 +0.2
4,020,890 - +0.2
4,020,896 + ABID97_RS19480 0.10 -0.5
4,021,214 + ABID97_RS19480 0.44 -0.7
4,021,671 - -0.3
4,021,790 + -1.7
4,022,016 + ABID97_RS19485 0.11 +0.7
4,022,545 + ABID97_RS19485 0.46 +0.1
4,022,546 - ABID97_RS19485 0.46 +0.0
4,022,546 - ABID97_RS19485 0.46 -0.0
4,022,551 + ABID97_RS19485 0.47 +0.4

Or see this region's nucleotide sequence