Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19470 and ABID97_RS19475 are separated by 13 nucleotides ABID97_RS19475 and ABID97_RS19480 are separated by 58 nucleotides ABID97_RS19480 and ABID97_RS19485 are separated by 105 nucleotides
ABID97_RS19470: ABID97_RS19470 - LysR family transcriptional regulator, at 4,019,255 to 4,020,166
_RS19470
ABID97_RS19475: ABID97_RS19475 - NADPH-dependent FMN reductase, at 4,020,180 to 4,020,740
_RS19475
ABID97_RS19480: ABID97_RS19480 - LysR family transcriptional regulator, at 4,020,799 to 4,021,743
_RS19480
ABID97_RS19485: ABID97_RS19485 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 4,021,849 to 4,023,357
_RS19485
Position (kb)
4020
4021
4022 Strain fitness (log2 ratio)
-1
0
1 at 4020.328 kb on - strand, within ABID97_RS19475 at 4020.328 kb on - strand, within ABID97_RS19475 at 4020.328 kb on - strand, within ABID97_RS19475 at 4020.503 kb on - strand, within ABID97_RS19475 at 4020.890 kb on - strand at 4020.896 kb on + strand, within ABID97_RS19480 at 4021.214 kb on + strand, within ABID97_RS19480 at 4021.671 kb on - strand at 4021.790 kb on + strand at 4022.016 kb on + strand, within ABID97_RS19485 at 4022.545 kb on + strand, within ABID97_RS19485 at 4022.546 kb on - strand, within ABID97_RS19485 at 4022.546 kb on - strand, within ABID97_RS19485 at 4022.551 kb on + strand, within ABID97_RS19485
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 4,020,328 - ABID97_RS19475 0.26 -0.0 4,020,328 - ABID97_RS19475 0.26 -0.7 4,020,328 - ABID97_RS19475 0.26 -0.4 4,020,503 - ABID97_RS19475 0.58 +0.2 4,020,890 - +0.2 4,020,896 + ABID97_RS19480 0.10 -0.5 4,021,214 + ABID97_RS19480 0.44 -0.7 4,021,671 - -0.3 4,021,790 + -1.7 4,022,016 + ABID97_RS19485 0.11 +0.7 4,022,545 + ABID97_RS19485 0.46 +0.1 4,022,546 - ABID97_RS19485 0.46 +0.0 4,022,546 - ABID97_RS19485 0.46 -0.0 4,022,551 + ABID97_RS19485 0.47 +0.4
Or see this region's nucleotide sequence