Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18540

Experiment: R2A outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18535 and ABID97_RS18540 overlap by 8 nucleotidesABID97_RS18540 and ABID97_RS18545 overlap by 4 nucleotides ABID97_RS18535: ABID97_RS18535 - AMP-binding protein, at 3,819,790 to 3,821,652 _RS18535 ABID97_RS18540: ABID97_RS18540 - ABC transporter ATP-binding protein, at 3,821,645 to 3,822,436 _RS18540 ABID97_RS18545: ABID97_RS18545 - ABC transporter ATP-binding protein, at 3,822,433 to 3,823,264 _RS18545 Position (kb) 3821 3822 3823Strain fitness (log2 ratio) -2 -1 0 1at 3820.928 kb on + strand, within ABID97_RS18535at 3820.928 kb on + strand, within ABID97_RS18535at 3820.991 kb on + strand, within ABID97_RS18535at 3821.333 kb on + strand, within ABID97_RS18535at 3821.334 kb on - strand, within ABID97_RS18535at 3821.513 kb on + strandat 3821.751 kb on + strand, within ABID97_RS18540at 3821.752 kb on - strand, within ABID97_RS18540at 3821.752 kb on - strand, within ABID97_RS18540at 3822.593 kb on + strand, within ABID97_RS18545at 3823.265 kb on - strandat 3823.354 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
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3,820,928 + ABID97_RS18535 0.61 -2.2
3,820,928 + ABID97_RS18535 0.61 -0.4
3,820,991 + ABID97_RS18535 0.64 -0.3
3,821,333 + ABID97_RS18535 0.83 +0.2
3,821,334 - ABID97_RS18535 0.83 +0.9
3,821,513 + -0.8
3,821,751 + ABID97_RS18540 0.13 +0.0
3,821,752 - ABID97_RS18540 0.14 +0.9
3,821,752 - ABID97_RS18540 0.14 +1.0
3,822,593 + ABID97_RS18545 0.19 -0.6
3,823,265 - +0.5
3,823,354 - +1.1

Or see this region's nucleotide sequence