Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08575

Experiment: R2A outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08570 and ABID97_RS08575 are separated by 28 nucleotidesABID97_RS08575 and ABID97_RS08580 are separated by 5 nucleotides ABID97_RS08570: ABID97_RS08570 - ferrous iron transporter B, at 1,800,356 to 1,802,251 _RS08570 ABID97_RS08575: ABID97_RS08575 - DUF6587 family protein, at 1,802,280 to 1,802,567 _RS08575 ABID97_RS08580: ABID97_RS08580 - FAD-dependent monooxygenase, at 1,802,573 to 1,803,757 _RS08580 Position (kb) 1802 1803Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1801.314 kb on - strand, within ABID97_RS08570at 1801.514 kb on + strand, within ABID97_RS08570at 1801.515 kb on - strand, within ABID97_RS08570at 1801.598 kb on + strand, within ABID97_RS08570at 1801.598 kb on + strand, within ABID97_RS08570at 1801.598 kb on + strand, within ABID97_RS08570at 1801.599 kb on - strand, within ABID97_RS08570at 1801.599 kb on - strand, within ABID97_RS08570at 1801.599 kb on - strand, within ABID97_RS08570at 1801.859 kb on + strand, within ABID97_RS08570at 1801.859 kb on + strand, within ABID97_RS08570at 1801.860 kb on - strand, within ABID97_RS08570at 1801.860 kb on - strand, within ABID97_RS08570at 1801.994 kb on + strand, within ABID97_RS08570at 1801.995 kb on - strand, within ABID97_RS08570at 1801.995 kb on - strand, within ABID97_RS08570at 1802.160 kb on - strandat 1802.181 kb on - strandat 1802.199 kb on - strandat 1802.219 kb on + strandat 1802.220 kb on - strandat 1802.249 kb on + strandat 1802.250 kb on - strandat 1802.250 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
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1,801,314 - ABID97_RS08570 0.51 -3.6
1,801,514 + ABID97_RS08570 0.61 -0.1
1,801,515 - ABID97_RS08570 0.61 -2.2
1,801,598 + ABID97_RS08570 0.66 -4.4
1,801,598 + ABID97_RS08570 0.66 +1.3
1,801,598 + ABID97_RS08570 0.66 -1.4
1,801,599 - ABID97_RS08570 0.66 -0.1
1,801,599 - ABID97_RS08570 0.66 -3.7
1,801,599 - ABID97_RS08570 0.66 -2.3
1,801,859 + ABID97_RS08570 0.79 -2.8
1,801,859 + ABID97_RS08570 0.79 -2.9
1,801,860 - ABID97_RS08570 0.79 -2.4
1,801,860 - ABID97_RS08570 0.79 -3.6
1,801,994 + ABID97_RS08570 0.86 -2.3
1,801,995 - ABID97_RS08570 0.86 -1.1
1,801,995 - ABID97_RS08570 0.86 -2.4
1,802,160 - -4.1
1,802,181 - -0.7
1,802,199 - -0.7
1,802,219 + -3.4
1,802,220 - -2.9
1,802,249 + -0.1
1,802,250 - -0.9
1,802,250 - +1.8

Or see this region's nucleotide sequence